RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 SPATA31D4Q6ZUB0 917 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 FAM47EQ6ZV65 393 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 KRT27Q7Z3Y8 459 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 SZRD1Q7Z422 152 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 GALNTL5Q7Z4T8 443 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 ADGRE4PQ86SQ3 457 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 PRPF39Q86UA1 669 aaKnown RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 FAM83AQ86UY5 434 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 IGDCC3Q8IVU1 814 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 CCDC105Q8IYK2 499 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 ULK2Q8IYT8 1036 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 C17orf53Q8N3J3 647 aaPredicted RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 FSTL5Q8N475 847 aaPredicted RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 LRRC71Q8N4P6 559 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP2.29□□□□□ -2.04
CHD3-217ENST00000574022 ZNF713Q8N859 430 aaPredicted RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 C11orf44Q8N8P7 122 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 RNF169Q8NCN4 708 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 FLAD1Q8NFF5 587 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 TOR1AIP2Q8NFQ8 470 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 SUN3Q8TAQ9 357 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 POC1BQ8TC44 478 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 AFAP1L1Q8TED9 768 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 MZB1Q8WU39 189 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 TMEM171Q8WVE6 324 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 RABGGTAQ92696 567 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 JAKMIP2Q96AA8 810 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 KIF1BPQ96EK5 621 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 MCRS1Q96EZ8 462 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 MARS2Q96GW9 593 aaKnown RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 PHACTR3Q96KR7 559 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 WDR24Q96S15 920 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 PIGSQ96S52 555 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 CD180Q99467 661 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 EIF3CQ99613 913 aaKnown RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 TCF25Q9BQ70 676 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 PHF7Q9BWX1 381 aaPredicted RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 INTS2Q9H0H0 1204 aaKnown RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 SLC25A18Q9H1K4 315 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 OR10A4Q9H209 315 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 RANBP17Q9H2T7 1088 aaKnown RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 MUC13Q9H3R2 512 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 SMOC2Q9H3U7 446 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 SERHL2Q9H4I8 314 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 SMARCAD1Q9H4L7 1026 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 CXorf36Q9H7Y0 433 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 ZWILCHQ9H900 591 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 BRF2Q9HAW0 419 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 SPON1Q9HCB6 807 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 CCDC177Q9NQR7 707 aaPredicted RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 PCDHB16Q9NRJ7 776 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 HCFC1R1Q9NWW0 138 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 ALKBH4Q9NXW9 302 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 VPS51Q9UID3 782 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 ZNF112Q9UJU3 913 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 NDRG4Q9ULP0 352 aaKnown RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 CDYLQ9Y232 598 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 ZBTB1Q9Y2K1 713 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 SLC27A6Q9Y2P4 619 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 GDAQ9Y2T3 454 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 ZDHHC9Q9Y397 364 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 ENTPD2Q9Y5L3 495 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 COL15A1P39059 1388 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 SOS1Q07889 1333 aaPredicted RBP2.28□□□□□ -2.04
CHD3-217ENST00000574022 KDM3AQ9Y4C1 1321 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 TBC1D3DA0A087WVF3 549 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 TBC1D3IA0A087WXS9 549 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 TBC1D3EA0A087X179 549 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 TBC1D3KA0A087X1G2 549 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 CCDC195A0A1B0GUA6 201 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 A0A1W2PRX2 142 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 PMS2P1A4D2B8 440 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 TBC1D3BA6NDS4 549 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 TBC1D3FA6NER0 549 aaPredicted RBP2.28□□□□□ -2.04
CHD3-217ENST00000574022 SH2D7A6NKC9 451 aaPredicted RBP2.28□□□□□ -2.04
CHD3-217ENST00000574022 SMTNL1A8MU46 457 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 TBC1D3LB9A6J9 549 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 AGPSO00116 658 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 DHX16O60231 1041 aaKnown RBP2.28□□□□□ -2.04
CHD3-217ENST00000574022 STC2O76061 302 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 PGM3O95394 542 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 WNT11O96014 354 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 CYP1A1P04798 512 aaPredicted RBP2.28□□□□□ -2.04
CHD3-217ENST00000574022 HLA-DOAP06340 250 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 GLI1P08151 1106 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 TBC1D3HP0C7X1 549 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 FCER1AP12319 257 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 CHN1P15882 459 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 ITGALP20701 1170 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 MUTP22033 750 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 RPL13P26373 211 aaKnown RBP2.28□□□□□ -2.04
CHD3-217ENST00000574022 MGAT1P26572 445 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 EPHA3P29320 983 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 GCH1P30793 250 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 SSTR4P31391 388 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 CSF2RBP32927 897 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 ABCD1P33897 745 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 THBS4P35443 961 aa2.28□□□□□ -2.04
CHD3-217ENST00000574022 PPARGP37231 505 aaPredicted RBP2.28□□□□□ -2.04
CHD3-217ENST00000574022 PSMB10P40306 273 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms