RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 LRRC4Q9HBW1 653 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 TBC1D14Q9P2M4 693 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 NAGPAQ9UK23 515 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 LSM7Q9UK45 103 aaKnown RBP8.53□□□□□ -1.04
VPS53-214ENST00000572607 TSPAN16Q9UKR8 245 aa8.53□□□□□ -1.04
VPS53-214ENST00000572607 E2F8A0AVK6 867 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 SHISA7A6NL88 538 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.52□□□□□ -1.05
VPS53-214ENST00000572607 TRDMT1O14717 391 aaKnown RBP8.52□□□□□ -1.05
VPS53-214ENST00000572607 CYP26A1O43174 497 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 ZDHHC11BP0C7U3 371 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 SETSIPP0DME0 302 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 IRF1P10914 325 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 RARGP13631 454 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 ERCC5P28715 1186 aaPredicted RBP8.52□□□□□ -1.05
VPS53-214ENST00000572607 KIF11P52732 1056 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 GCNT1Q02742 428 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 BST2Q10589 180 aaKnown RBP8.52□□□□□ -1.05
VPS53-214ENST00000572607 STILQ15468 1287 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 FBXO43Q4G163 708 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 TMEM196Q5HYL7 178 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 CT47A1Q5JQC4 288 aaPredicted RBP8.52□□□□□ -1.05
VPS53-214ENST00000572607 RSRC2Q7L4I2 434 aaKnown RBP8.52□□□□□ -1.05
VPS53-214ENST00000572607 RRAGAQ7L523 313 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 ENOSF1Q7L5Y1 443 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 GPRIN1Q7Z2K8 1008 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 CCDC186Q7Z3E2 898 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 PIGZQ86VD9 579 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 KIAA2013Q8IYS2 634 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 SIX6OS1Q8N1H7 587 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 DCLK2Q8N568 766 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 OTUB2Q96DC9 234 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 REPIN1Q9BWE0 567 aaKnown RBP8.52□□□□□ -1.05
VPS53-214ENST00000572607 FAM126AQ9BYI3 521 aaPredicted RBP8.52□□□□□ -1.05
VPS53-214ENST00000572607 INTS2Q9H0H0 1204 aaKnown RBP8.52□□□□□ -1.05
VPS53-214ENST00000572607 PRMT8Q9NR22 394 aaPredicted RBP8.52□□□□□ -1.05
VPS53-214ENST00000572607 RBM12Q9NTZ6 932 aaKnown RBP8.52□□□□□ -1.05
VPS53-214ENST00000572607 LMBRD1Q9NUN5 540 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 ZSCAN32Q9NX65 697 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 CLIC5Q9NZA1 410 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 DNMT3LQ9UJW3 386 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 STRIP2Q9ULQ0 834 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 PCDHGA2Q9Y5H1 932 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 USP24Q9UPU5 2620 aa8.52□□□□□ -1.05
VPS53-214ENST00000572607 A0A1W2PQH9 124 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 HHLA1C9JL84 531 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 J3QL48 77 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 XPO1O14980 1071 aaKnown RBP8.51□□□□□ -1.05
VPS53-214ENST00000572607 MBD3O95983 291 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 LMNAP02545 664 aaKnown RBP8.51□□□□□ -1.05
VPS53-214ENST00000572607 CYP17A1P05093 508 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 KRT5P13647 590 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 PRKCSHP14314 528 aaPredicted RBP8.51□□□□□ -1.05
VPS53-214ENST00000572607 PLA2G4AP47712 749 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 GALK1P51570 392 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 TKTL1P51854 596 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 MFAP3P55082 362 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 GAD2Q05329 585 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 PDE4CQ08493 712 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 FZD5Q13467 585 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 CCINQ13939 588 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 DPCR1Q3MIW9 517 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 PREPLQ4J6C6 727 aaPredicted RBP8.51□□□□□ -1.05
VPS53-214ENST00000572607 C10orf120Q5SQS8 335 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 BTBD8Q5XKL5 378 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 KLHDC10Q6PID8 442 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 TSSK4Q6SA08 328 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 GBP6Q6ZN66 633 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 SUMF1Q8NBK3 374 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 RBBP8NLQ8NC74 664 aaPredicted RBP8.51□□□□□ -1.05
VPS53-214ENST00000572607 GOLGA1Q92805 767 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 ACDQ96AP0 544 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 CNTNAP3BQ96NU0 1288 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 HINFPQ9BQA5 517 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 CNTNAP3Q9BZ76 1288 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 LINC00597Q9H2U6 94 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 THAP9Q9H5L6 903 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 ATP13A2Q9NQ11 1180 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 CYLDQ9NQC7 956 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.51□□□□□ -1.05
VPS53-214ENST00000572607 RASAL2Q9UJF2 1139 aa8.51□□□□□ -1.05
VPS53-214ENST00000572607 TICRRQ7Z2Z1 1910 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 GTPBP10A4D1E9 387 aaKnown RBP8.5□□□□□ -1.05
VPS53-214ENST00000572607 OTOL1A6NHN0 477 aaPredicted RBP8.5□□□□□ -1.05
VPS53-214ENST00000572607 M0QYV0 167 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 O00370 1275 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 PES1O00541 588 aaKnown RBP8.5□□□□□ -1.05
VPS53-214ENST00000572607 SCAMP3O14828 347 aaKnown RBP8.5□□□□□ -1.05
VPS53-214ENST00000572607 MED7O43513 233 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 ZBED1O96006 694 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 EGFP01133 1207 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 TPM2P07951 284 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 COL4A2P08572 1712 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 ADH5P11766 374 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 USP8P40818 1118 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 YWHAGP61981 247 aaKnown RBP eCLIP8.5□□□□□ -1.05
VPS53-214ENST00000572607 COG7P83436 770 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 ZXDBP98169 803 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 SATB1Q01826 763 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 ADIGQ0VDE8 80 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms