RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 NGRNQ9NPE2 291 aaKnown RBP11.15□□□□□ -0.62
CCDC40-207ENST00000572253 IL1RAPL1Q9NZN1 696 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 KIAA1217Q5T5P2 1943 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 TTLL13PA6NNM8 815 aa11.15□□□□□ -0.63
CCDC40-207ENST00000572253 CXorf49A8MYA2 514 aaPredicted RBP11.15□□□□□ -0.63
CCDC40-207ENST00000572253 RFPL1O75677 317 aa11.15□□□□□ -0.63
CCDC40-207ENST00000572253 HIRAP54198 1017 aaPredicted RBP11.15□□□□□ -0.63
CCDC40-207ENST00000572253 SESTD1Q86VW0 696 aa11.15□□□□□ -0.63
CCDC40-207ENST00000572253 ST13P4Q8IZP2 240 aaPredicted RBP11.15□□□□□ -0.63
CCDC40-207ENST00000572253 SEPT1Q8WYJ6 367 aa11.15□□□□□ -0.63
CCDC40-207ENST00000572253 GATA6Q92908 595 aa11.15□□□□□ -0.63
CCDC40-207ENST00000572253 STN1Q9H668 368 aaKnown RBP11.15□□□□□ -0.63
CCDC40-207ENST00000572253 USP29Q9HBJ7 922 aa11.15□□□□□ -0.63
CCDC40-207ENST00000572253 HOXC10Q9NYD6 342 aa11.15□□□□□ -0.63
CCDC40-207ENST00000572253 BCLAF3A2AJT9 711 aaKnown RBP11.14□□□□□ -0.63
CCDC40-207ENST00000572253 PRR5-ARHGAP8B1AHC4 643 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 C19orf81C9J6K1 198 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 FAM189A1O60320 539 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 GABRB2P47870 512 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 ARHGAP8P85298 464 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 CXCL9Q07325 125 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 DYNC1I2Q13409 638 aaKnown RBP11.14□□□□□ -0.63
CCDC40-207ENST00000572253 UNC5AQ6ZN44 842 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 PLD5Q8N7P1 536 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 TEPSINQ96N21 525 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 BCO2Q9BYV7 579 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 IFT122Q9HBG6 1241 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 SLC7A8Q9UHI5 535 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 WDR81Q562E7 1941 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 ENDOD1O94919 500 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 MRPS5P82675 430 aaKnown RBP11.14□□□□□ -0.63
CCDC40-207ENST00000572253 CBLBQ13191 982 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 EFHC1Q5JVL4 640 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 TMCO4Q5TGY1 634 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 RTP4Q96DX8 246 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 PANX3Q96QZ0 392 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 PEBP4Q96S96 227 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 TBCBQ99426 244 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 APOL6Q9BWW8 343 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 DDX43Q9NXZ2 648 aaKnown RBP11.14□□□□□ -0.63
CCDC40-207ENST00000572253 IGKV6D-21A0A0A0MT36 114 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.14□□□□□ -0.63
CCDC40-207ENST00000572253 CYB561D2O14569 222 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 LYNP07948 512 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 UBA1P22314 1058 aaKnown RBP11.14□□□□□ -0.63
CCDC40-207ENST00000572253 SDC4P31431 198 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 SNX16P57768 344 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 BIRC2Q13490 618 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 ILDR2Q71H61 639 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 UBA3Q8TBC4 463 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 CLPTM1LQ96KA5 538 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 OLFM3Q96PB7 478 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 EBNA1BP2Q99848 306 aaKnown RBP11.14□□□□□ -0.63
CCDC40-207ENST00000572253 CCDC106Q9BWC9 280 aa11.14□□□□□ -0.63
CCDC40-207ENST00000572253 SLC15A5A6NIM6 579 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 ACKR2O00590 384 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 SNNO75324 88 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-207ENST00000572253 ERFP50548 548 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 COPAP53621 1224 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 SH3BGRP55822 239 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-207ENST00000572253 TEX44Q53QW1 395 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 FASTKD1Q53R41 847 aaKnown RBP11.13□□□□□ -0.63
CCDC40-207ENST00000572253 CASC4Q6P4E1 433 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 RASSF3Q86WH2 238 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 TTC39CQ8N584 583 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 CHST13Q8NET6 341 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 JDP2Q8WYK2 163 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 ELOVL4Q9GZR5 314 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 SMYD3Q9H7B4 428 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 VCX3AQ9NNX9 186 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 PLA2G4CQ9UP65 541 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 DNAJC16Q9Y2G8 782 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 C2CD4BA6NLJ0 364 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 GLRA3O75311 464 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 CSH1P0DML2 217 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 CSH2P0DML3 217 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 CXCL8P10145 99 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 ZFXP17010 805 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-207ENST00000572253 AOC1P19801 751 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 KCNA4P22459 653 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 ATICP31939 592 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 TCF7P36402 384 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-207ENST00000572253 MAGEA6P43360 314 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 TSHZ1Q6ZSZ6 1077 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 CAND1Q86VP6 1230 aaKnown RBP11.13□□□□□ -0.63
CCDC40-207ENST00000572253 KBTBD2Q8IY47 623 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 GPATCH2LQ9NWQ4 482 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 FAM159BA6NKW6 160 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 CILPO75339 1184 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 FARP2O94887 1054 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-207ENST00000572253 ITGB3P05106 788 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 ZCCHC18P0CG32 403 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 GPD2P43304 727 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 CNTN2Q02246 1040 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 C15orf59Q2T9L4 293 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-207ENST00000572253 PPP6R3Q5H9R7 873 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-207ENST00000572253 CFAP157Q5JU67 520 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 LRRC71Q8N4P6 559 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 PIWIL2Q8TC59 973 aaKnown RBP11.13□□□□□ -0.63
CCDC40-207ENST00000572253 ACMSDQ8TDX5 336 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms