RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ABCB11O95342 1321 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 IGLV3-22A0A075B6J6 115 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 GOLGA8QA0A0J9YX86 632 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 GOLGA8OA6NCC3 632 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 CAPN8A6NHC0 703 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 CFAP99D6REC4 459 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 GOLGA8NF8WBI6 632 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 GOLGA8RI6L899 631 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 HDAC3O15379 428 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 TNFAIP8O95379 198 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 BMP10O95393 424 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 APBA3O96018 575 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 ATF4P18848 351 aaPredicted RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 POLR2CP19387 275 aaPredicted RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 LLGL1Q15334 1064 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 TLR1Q15399 786 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 SLC30A10Q6XR72 485 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 NET1Q7Z628 596 aaPredicted RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 DHDDSQ86SQ9 333 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 CATSPER3Q86XQ3 398 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 ALLCQ8N6M5 410 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 DCAF4Q8WV16 495 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 MTBPQ96DY7 904 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 GMLQ99445 158 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 HEMGNQ9BXL5 484 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 ANO3Q9BYT9 981 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 NOL6Q9H6R4 1146 aaKnown RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 S100A14Q9HCY8 104 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 STMN3Q9NZ72 180 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 SRGAP2CP0DJJ0 459 aa11.21□□□□□ -0.61
CLK3-226ENST00000569406 SRGAP2BP0DMP2 458 aa11.21□□□□□ -0.61
CLK3-226ENST00000569406 KLRC1P26715 233 aa11.21□□□□□ -0.61
CLK3-226ENST00000569406 HAAOP46952 286 aa11.21□□□□□ -0.61
CLK3-226ENST00000569406 HSPA14Q0VDF9 509 aa11.21□□□□□ -0.61
CLK3-226ENST00000569406 MTMR2Q13614 643 aa11.21□□□□□ -0.61
CLK3-226ENST00000569406 ZYXQ15942 572 aaKnown RBP11.21□□□□□ -0.61
CLK3-226ENST00000569406 SLFN13Q68D06 897 aa11.21□□□□□ -0.61
CLK3-226ENST00000569406 EPM2AIP1Q7L775 607 aaPredicted RBP11.21□□□□□ -0.61
CLK3-226ENST00000569406 OLIG1Q8TAK6 271 aa11.21□□□□□ -0.61
CLK3-226ENST00000569406 SLC22A8Q8TCC7 542 aa11.21□□□□□ -0.61
CLK3-226ENST00000569406 SCFD2Q8WU76 684 aa11.21□□□□□ -0.61
CLK3-226ENST00000569406 SAR1AQ9NR31 198 aa11.21□□□□□ -0.61
CLK3-226ENST00000569406 PCDHA12Q9UN75 941 aa11.21□□□□□ -0.61
CLK3-226ENST00000569406 H3BRJ5 948 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 BUD23O43709 281 aaKnown RBP11.21□□□□□ -0.62
CLK3-226ENST00000569406 SEMA3DO95025 777 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 FKBP9O95302 570 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 ALAS2P22557 587 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 MAGEA4P43358 317 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 CDK9P50750 372 aaKnown RBP11.21□□□□□ -0.62
CLK3-226ENST00000569406 HNRNPFP52597 415 aaKnown RBP11.21□□□□□ -0.62
CLK3-226ENST00000569406 MARSP56192 900 aaKnown RBP11.21□□□□□ -0.62
CLK3-226ENST00000569406 DCAF17Q5H9S7 520 aaPredicted RBP11.21□□□□□ -0.62
CLK3-226ENST00000569406 MEI1Q5TIA1 1274 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 SLC16A10Q8TF71 515 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 WASH6PQ9NQA3 447 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 STARD13Q9Y3M8 1113 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 ILVBLA1L0T0 632 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 B2RBV5 119 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 PTPN9P43378 593 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 PTK2BQ14289 1009 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 GK3PQ14409 553 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 HERC4Q5GLZ8 1057 aaPredicted RBP11.21□□□□□ -0.62
CLK3-226ENST00000569406 ALKBH2Q6NS38 261 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 TICAM1Q8IUC6 712 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 CCDC28AQ8IWP9 274 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 IMPG2Q9BZV3 1241 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 COQ3Q9NZJ6 369 aa11.21□□□□□ -0.62
CLK3-226ENST00000569406 PARP14Q460N5 1801 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 TMX2-CTNND1H3BSU7 103 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 TK2O00142 265 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 KPNA4O00629 521 aaPredicted RBP11.2□□□□□ -0.62
CLK3-226ENST00000569406 ALOX15BO15296 676 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 KLHL2O95198 593 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 RPA1P27694 616 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 SREBF1P36956 1147 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 ARHGAP4P98171 946 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 LRRC63Q05C16 580 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 POTEGQ6S5H5 508 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 MOXD1Q6UVY6 613 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 GLG1Q92896 1179 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 PANX3Q96QZ0 392 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 Q9H521 79 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 TMEM59LQ9UK28 342 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 ARHGAP26Q9UNA1 814 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 KIAA1024Q9UPX6 916 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 ARHGAP42A6NI28 874 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 B8ZZF3 427 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 EML1O00423 815 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 HLA-DOAP06340 250 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 MLLT6P55198 1093 aaPredicted RBP11.2□□□□□ -0.62
CLK3-226ENST00000569406 CHRNEQ04844 493 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 SELENBP1Q13228 472 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 PGS1Q32NB8 556 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 HABP4Q5JVS0 413 aaKnown RBP11.2□□□□□ -0.62
CLK3-226ENST00000569406 RABGAP1LQ5R372 815 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 PPM1LQ5SGD2 360 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 CLVS2Q5SYC1 327 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 ZNF600Q6ZNG1 722 aa11.2□□□□□ -0.62
CLK3-226ENST00000569406 ZFPM2Q8WW38 1151 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms