RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	MBL2	P11226	248 aa	Predicted RBP	18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	TCF3	P15923	654 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	ATP5C1	P36542	298 aa	Known RBP	18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	YWHAZ	P63104	245 aa	Known RBP	18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	PITX1	P78337	314 aa	Predicted RBP	18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	ZNF77	Q15935	545 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	C10orf120	Q5SQS8	335 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	OTUD1	Q5VV17	481 aa	Predicted RBP	18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	DEFB106A	Q8N104	65 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	C3orf20	Q8ND61	904 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	DQX1	Q8TE96	717 aa	Known RBP	18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	RSAD2	Q8WXG1	361 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	WBP2	Q969T9	261 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	ELSPBP1	Q96BH3	223 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	VCPIP1	Q96JH7	1222 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	CDK5RAP1	Q96SZ6	601 aa	Known RBP	18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	KLF16	Q9BXK1	252 aa	Predicted RBP	18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	KCNK12	Q9HB15	430 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	CD320	Q9NPF0	282 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	SPTLC3	Q9NUV7	552 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	SMPD4	Q9NXE4	827 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	OBP2A	Q9NY56	170 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	WDR35	Q9P2L0	1181 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	LIMD1	Q9UGP4	676 aa		18.82	■□□□□ 0.6
COMMD4-222	ENST00000568034	HEPACAM2	A8MVW5	462 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	ATMIN	O43313	823 aa	Predicted RBP	18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	ECI2	O75521	394 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	IGLV3-25	P01717	112 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	ASGR2	P07307	311 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	NCAM1	P13591	858 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	FLT3	P36888	993 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	EFEMP1	Q12805	493 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	PPP1R15B	Q5SWA1	713 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	CCDC122	Q5T0U0	273 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	VIT	Q6UXI7	678 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	MTSS1L	Q765P7	747 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	JOSD2	Q8TAC2	188 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	GOLGA1	Q92805	767 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	CCDC42	Q96M95	316 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	KXD1	Q9BQD3	176 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	ADAM33	Q9BZ11	813 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	DEF6	Q9H4E7	631 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	ZFP14	Q9HCL3	533 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	METTL5	Q9NRN9	209 aa	Known RBP	18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	OLA1	Q9NTK5	396 aa	Known RBP	18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	SFMBT1	Q9UHJ3	866 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	RASAL2	Q9UJF2	1139 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	DNMT3L	Q9UJW3	386 aa		18.81	■□□□□ 0.6
COMMD4-222	ENST00000568034	SOWAHD	A6NJG2	315 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	LEFTY2	O00292	366 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	AKR1B10	O60218	316 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	GREM1	O60565	184 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	GSDMD	P57764	484 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	EIF4EBP2	Q13542	120 aa	Predicted RBP	18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	PLEKHA7	Q6IQ23	1121 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	RSRC2	Q7L4I2	434 aa	Known RBP	18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	ARC	Q7LC44	396 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	TADA2B	Q86TJ2	420 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	TAC4	Q86UU9	113 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	CELF5	Q8N6W0	485 aa	Known RBP	18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	SH3RF2	Q8TEC5	729 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	PDLIM2	Q96JY6	352 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	TRIM62	Q9BVG3	475 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	PACSIN1	Q9BY11	444 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	SMOC2	Q9H3U7	446 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	KIF9	Q9HAQ2	790 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	GKN1	Q9NS71	199 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	MARCH2	Q9P0N8	246 aa		18.8	■□□□□ 0.6
COMMD4-222	ENST00000568034	MYO10	Q9HD67	2058 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	MSI1	O43347	362 aa	Known RBP	18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	LCA5L	O95447	670 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	MATK	P42679	507 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	MAMLD1	Q13495	774 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	MTF1	Q14872	753 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	DNAJC24	Q6P3W2	148 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	RAD9B	Q6WBX8	426 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	MIB1	Q86YT6	1006 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	TMTC1	Q8IUR5	882 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	CCDC170	Q8IYT3	715 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	EMC1	Q8N766	993 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	RNF139	Q8WU17	664 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	NT5C3B	Q969T7	300 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	NXPE3	Q969Y0	559 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	ZNF653	Q96CK0	615 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	BAG1	Q99933	345 aa	Predicted RBP	18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	DDX23	Q9BUQ8	820 aa	Known RBP	18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	NACA2	Q9H009	215 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	THAP2	Q9H0W7	228 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	CALCOCO1	Q9P1Z2	691 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	IGSF9	Q9P2J2	1179 aa		18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	CNOT8	Q9UFF9	292 aa	Known RBP	18.79	■□□□□ 0.6
COMMD4-222	ENST00000568034	C2CD4B	A6NLJ0	364 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	SIGLEC16	A6NMB1	481 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	GOLGA6L6	A8MZA4	724 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	CAPN9	O14815	690 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	IGLV3-27	P01718	113 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	MYBL1	P10243	752 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	TFE3	P19532	575 aa	Predicted RBP	18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	ABCB4	P21439	1286 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	NOS2	P35228	1153 aa		18.78	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms