RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 FAM149B1Q96BN6 582 aa20.46■□□□□ 0.87
CLN3-225ENST00000566824 NOX5Q96PH1 765 aa20.46■□□□□ 0.87
CLN3-225ENST00000566824 EBF3Q9H4W6 596 aa20.46■□□□□ 0.87
CLN3-225ENST00000566824 HEBP1Q9NRV9 189 aa20.46■□□□□ 0.87
CLN3-225ENST00000566824 SEPT11Q9NVA2 429 aaKnown RBP20.46■□□□□ 0.87
CLN3-225ENST00000566824 GTSE1Q9NYZ3 720 aa20.46■□□□□ 0.87
CLN3-225ENST00000566824 MARCH2Q9P0N8 246 aa20.46■□□□□ 0.87
CLN3-225ENST00000566824 LUC7L2Q9Y383 392 aaKnown RBP20.46■□□□□ 0.87
CLN3-225ENST00000566824 F5P12259 2224 aa20.45■□□□□ 0.86
CLN3-225ENST00000566824 MMP8P22894 467 aa20.45■□□□□ 0.86
CLN3-225ENST00000566824 SOX9P48436 509 aa20.45■□□□□ 0.86
CLN3-225ENST00000566824 KLHL30Q0D2K2 578 aa20.45■□□□□ 0.86
CLN3-225ENST00000566824 TBX2Q13207 712 aaPredicted RBP20.45■□□□□ 0.86
CLN3-225ENST00000566824 ARHGAP29Q52LW3 1261 aa20.45■□□□□ 0.86
CLN3-225ENST00000566824 TMC6Q7Z403 805 aa20.45■□□□□ 0.86
CLN3-225ENST00000566824 ADAM32Q8TC27 787 aa20.45■□□□□ 0.86
CLN3-225ENST00000566824 C18orf8Q96DM3 657 aa20.45■□□□□ 0.86
CLN3-225ENST00000566824 C11orf70Q9BRQ4 267 aa20.45■□□□□ 0.86
CLN3-225ENST00000566824 SYNCQ9H7C4 482 aa20.45■□□□□ 0.86
CLN3-225ENST00000566824 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.45■□□□□ 0.86
CLN3-225ENST00000566824 SLC12A8A0AV02 714 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 TMEM221A6NGB7 291 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 GOLGA8SH3BPF8 625 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 M0R296 226 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 DDX3XO00571 662 aaKnown RBP eCLIP20.44■□□□□ 0.86
CLN3-225ENST00000566824 STC2O76061 302 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 GJB6O95452 261 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 KLKB1P03952 638 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 NCAM1P13591 858 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 TNFAIP3P21580 790 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 YWHAZP63104 245 aaKnown RBP20.44■□□□□ 0.86
CLN3-225ENST00000566824 SLC6A3Q01959 620 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 CENPCQ03188 943 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 EML3Q32P44 896 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 SLC44A4Q53GD3 710 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 MSANTD2Q6P1R3 559 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 TRIM72Q6ZMU5 477 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 FMNL3Q8IVF7 1028 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 BBS7Q8IWZ6 715 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 SIX5Q8N196 739 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 DQX1Q8TE96 717 aaKnown RBP20.44■□□□□ 0.86
CLN3-225ENST00000566824 IPO4Q8TEX9 1081 aaKnown RBP20.44■□□□□ 0.86
CLN3-225ENST00000566824 RNF139Q8WU17 664 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 OSCP1Q8WVF1 389 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 IRF7Q92985 503 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 CHFRQ96EP1 664 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 THG1LQ9NWX6 298 aaKnown RBP20.44■□□□□ 0.86
CLN3-225ENST00000566824 DUS2Q9NX74 493 aaKnown RBP20.44■□□□□ 0.86
CLN3-225ENST00000566824 WNT16Q9UBV4 365 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 FBXL21Q9UKT6 434 aa20.44■□□□□ 0.86
CLN3-225ENST00000566824 CCDC172P0C7W6 258 aa20.43■□□□□ 0.86
CLN3-225ENST00000566824 ADKP55263 362 aaKnown RBP20.43■□□□□ 0.86
CLN3-225ENST00000566824 NAIF1Q69YI7 327 aaPredicted RBP20.43■□□□□ 0.86
CLN3-225ENST00000566824 TRNP1Q6NT89 227 aa20.43■□□□□ 0.86
CLN3-225ENST00000566824 WDR59Q6PJI9 974 aa20.43■□□□□ 0.86
CLN3-225ENST00000566824 DEFB106AQ8N104 65 aa20.43■□□□□ 0.86
CLN3-225ENST00000566824 ZNF397Q8NF99 534 aaPredicted RBP20.43■□□□□ 0.86
CLN3-225ENST00000566824 SYN2Q92777 582 aaPredicted RBP20.43■□□□□ 0.86
CLN3-225ENST00000566824 IQCDQ96DY2 449 aa20.43■□□□□ 0.86
CLN3-225ENST00000566824 SLC2A13Q96QE2 648 aa20.43■□□□□ 0.86
CLN3-225ENST00000566824 CDK5RAP1Q96SZ6 601 aaKnown RBP20.43■□□□□ 0.86
CLN3-225ENST00000566824 ADAM33Q9BZ11 813 aa20.43■□□□□ 0.86
CLN3-225ENST00000566824 MIA3Q5JRA6 1907 aa20.43■□□□□ 0.86
CLN3-225ENST00000566824 E2F8A0AVK6 867 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 TMCO5BA8MYB1 307 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 SART1O43290 800 aaKnown RBP20.42■□□□□ 0.86
CLN3-225ENST00000566824 CD72P21854 359 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 CC2D1AQ6P1N0 951 aaPredicted RBP20.42■□□□□ 0.86
CLN3-225ENST00000566824 Q6ZNB5 142 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 MON1BQ7L1V2 547 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 SLC26A9Q7LBE3 791 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 TADA2BQ86TJ2 420 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 TAC4Q86UU9 113 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 DDX42Q86XP3 938 aaKnown RBP eCLIP20.42■□□□□ 0.86
CLN3-225ENST00000566824 PHF13Q86YI8 300 aaPredicted RBP20.42■□□□□ 0.86
CLN3-225ENST00000566824 GOLGA1Q92805 767 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 DNASE1L2Q92874 299 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 P2RY11Q96G91 374 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 POPDC2Q9HBU9 364 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 TRPV5Q9NQA5 729 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 ARHGEF3Q9NR81 526 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 OLA1Q9NTK5 396 aaKnown RBP20.42■□□□□ 0.86
CLN3-225ENST00000566824 ARHGAP20Q9P2F6 1191 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 SH3BP1Q9Y3L3 701 aa20.42■□□□□ 0.86
CLN3-225ENST00000566824 ZDBF2Q9HCK1 2354 aa20.41■□□□□ 0.86
CLN3-225ENST00000566824 TFE3P19532 575 aaPredicted RBP20.41■□□□□ 0.86
CLN3-225ENST00000566824 HNRNPH3P31942 346 aaKnown RBP20.41■□□□□ 0.86
CLN3-225ENST00000566824 NSFP46459 744 aaKnown RBP20.41■□□□□ 0.86
CLN3-225ENST00000566824 IFNAR2P48551 515 aa20.41■□□□□ 0.86
CLN3-225ENST00000566824 RNASE9P60153 205 aaKnown RBP20.41■□□□□ 0.86
CLN3-225ENST00000566824 RUNX3Q13761 415 aa20.41■□□□□ 0.86
CLN3-225ENST00000566824 MLF2Q15773 248 aaPredicted RBP20.41■□□□□ 0.86
CLN3-225ENST00000566824 EFHC1Q5JVL4 640 aa20.41■□□□□ 0.86
CLN3-225ENST00000566824 FAM102AQ5T9C2 384 aaPredicted RBP20.41■□□□□ 0.86
CLN3-225ENST00000566824 OTUD1Q5VV17 481 aaPredicted RBP20.41■□□□□ 0.86
CLN3-225ENST00000566824 ACAD10Q6JQN1 1059 aa20.41■□□□□ 0.86
CLN3-225ENST00000566824 HTR3DQ70Z44 454 aa20.41■□□□□ 0.86
CLN3-225ENST00000566824 DNAJC7Q99615 494 aa20.41■□□□□ 0.86
CLN3-225ENST00000566824 NUCKS1Q9H1E3 243 aaKnown RBP20.41■□□□□ 0.86
CLN3-225ENST00000566824 ASNSD1Q9NWL6 643 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms