RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 HECTD3Q5T447 861 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 VITQ6UXI7 678 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 YAF2Q8IY57 180 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 ARHGAP18Q8N392 663 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 ARL14EPQ8N8R7 260 aaPredicted RBP18.11■□□□□ 0.49
CLN3-217ENST00000565354 KCTD13Q8WZ19 329 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 HSFY1Q96LI6 401 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 NOX5Q96PH1 765 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 NUP58Q9BVL2 599 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 ULBP1Q9BZM6 244 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 XPO4Q9C0E2 1151 aaKnown RBP18.11■□□□□ 0.49
CLN3-217ENST00000565354 NAGPAQ9UK23 515 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 NCANO14594 1321 aa18.11■□□□□ 0.49
CLN3-217ENST00000565354 ZNF638Q14966 1978 aaKnown RBP18.11■□□□□ 0.49
CLN3-217ENST00000565354 BAHCC1Q9P281 2608 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 FAM92AA1XBS5 289 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 PIK3R2O00459 728 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 HRO43593 1189 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 GDF9O60383 454 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 ZBED1O96006 694 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 CHRNB1P11230 501 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 RALAP11233 206 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 PFKLP17858 780 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 VIPR2P41587 438 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 GPD2P43304 727 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 ACADSBP45954 432 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 PSEN1P49768 467 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 RAB41Q5JT25 222 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 PMF1Q6P1K2 205 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 CCDC186Q7Z3E2 898 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 SLC35F5Q8WV83 523 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 DDX1Q92499 740 aaKnown RBP18.1■□□□□ 0.49
CLN3-217ENST00000565354 SMG9Q9H0W8 520 aaKnown RBP18.1■□□□□ 0.49
CLN3-217ENST00000565354 KIF9Q9HAQ2 790 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 PCDHGC3Q9UN70 934 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 USP3Q9Y6I4 520 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 ATRXP46100 2492 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 DENND4CQ5VZ89 1909 aa18.1■□□□□ 0.49
CLN3-217ENST00000565354 A0A1W2PQH9 124 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 HEPACAM2A8MVW5 462 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 CHURC1-FNTBB4DL54 471 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 FOXD2O60548 495 aaPredicted RBP18.09■□□□□ 0.49
CLN3-217ENST00000565354 MBL2P11226 248 aaPredicted RBP18.09■□□□□ 0.49
CLN3-217ENST00000565354 FERP16591 822 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 WEE1P30291 646 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 CNR2P34972 360 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 FNTBP49356 437 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 SNX16P57768 344 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 DMWDQ09019 674 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 GAS6Q14393 721 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.09■□□□□ 0.49
CLN3-217ENST00000565354 TADA2BQ86TJ2 420 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 ZNF677Q86XU0 584 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 SPEM1Q8N4L4 309 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 TMEM35BQ8NCS4 154 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 DEPDC1BQ8WUY9 529 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 GOLGA1Q92805 767 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 CYP2S1Q96SQ9 504 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 MIS12Q9H081 205 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 SYNCQ9H7C4 482 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 TRPV4Q9HBA0 871 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 CNGB3Q9NQW8 809 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 TDP1Q9NUW8 608 aa18.09■□□□□ 0.49
CLN3-217ENST00000565354 NUP210Q8TEM1 1887 aaPredicted RBP18.09■□□□□ 0.49
CLN3-217ENST00000565354 ZNF263O14978 683 aa18.08■□□□□ 0.48
CLN3-217ENST00000565354 TLR5O60602 858 aa18.08■□□□□ 0.48
CLN3-217ENST00000565354 FBXO21O94952 628 aa18.08■□□□□ 0.48
CLN3-217ENST00000565354 PAPSS2O95340 614 aaPredicted RBP18.08■□□□□ 0.48
CLN3-217ENST00000565354 PRAMEF12O95522 483 aa18.08■□□□□ 0.48
CLN3-217ENST00000565354 RARGP13631 454 aa18.08■□□□□ 0.48
CLN3-217ENST00000565354 MLLT6P55198 1093 aaPredicted RBP18.08■□□□□ 0.48
CLN3-217ENST00000565354 YWHAGP61981 247 aaKnown RBP eCLIP18.08■□□□□ 0.48
CLN3-217ENST00000565354 SRSF5Q13243 272 aaKnown RBP18.08■□□□□ 0.48
CLN3-217ENST00000565354 SNX30Q5VWJ9 437 aa18.08■□□□□ 0.48
CLN3-217ENST00000565354 BTBD8Q5XKL5 378 aa18.08■□□□□ 0.48
CLN3-217ENST00000565354 RSRC2Q7L4I2 434 aaKnown RBP18.08■□□□□ 0.48
CLN3-217ENST00000565354 NOP9Q86U38 636 aaKnown RBP18.08■□□□□ 0.48
CLN3-217ENST00000565354 C1orf131Q8NDD1 294 aaKnown RBP18.08■□□□□ 0.48
CLN3-217ENST00000565354 ZNF397Q8NF99 534 aaPredicted RBP18.08■□□□□ 0.48
CLN3-217ENST00000565354 BPIFB1Q8TDL5 484 aa18.08■□□□□ 0.48
CLN3-217ENST00000565354 EPS8L1Q8TE68 723 aa18.08■□□□□ 0.48
CLN3-217ENST00000565354 IPO4Q8TEX9 1081 aaKnown RBP18.08■□□□□ 0.48
CLN3-217ENST00000565354 IQCDQ96DY2 449 aa18.08■□□□□ 0.48
CLN3-217ENST00000565354 CDK5RAP1Q96SZ6 601 aaKnown RBP18.08■□□□□ 0.48
CLN3-217ENST00000565354 LHX5Q9H2C1 402 aa18.08■□□□□ 0.48
CLN3-217ENST00000565354 SEPT11Q9NVA2 429 aaKnown RBP18.08■□□□□ 0.48
CLN3-217ENST00000565354 THG1LQ9NWX6 298 aaKnown RBP18.08■□□□□ 0.48
CLN3-217ENST00000565354 OBP2AQ9NY56 170 aa18.08■□□□□ 0.48
CLN3-217ENST00000565354 ANGPTL2Q9UKU9 493 aa18.08■□□□□ 0.48
CLN3-217ENST00000565354 MYO6Q9UM54 1294 aa18.08■□□□□ 0.48
CLN3-217ENST00000565354 FRYQ5TBA9 3013 aa18.08■□□□□ 0.48
CLN3-217ENST00000565354 LRRC53A6NM62 1247 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 OAS1P00973 400 aaKnown RBP18.07■□□□□ 0.48
CLN3-217ENST00000565354 ZDHHC11BP0C7U3 371 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 KCNA4P22459 653 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 TUBP50607 506 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 PDCLQ13371 301 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 ZNF268Q14587 947 aaPredicted RBP18.07■□□□□ 0.48
CLN3-217ENST00000565354 ASIC2Q16515 512 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 FIGNQ5HY92 759 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms