RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 PSEN1P49768 467 aa18.03■□□□□ 0.48
CLN3-216ENST00000565316 EDRF1Q3B7T1 1238 aa18.03■□□□□ 0.48
CLN3-216ENST00000565316 PPP1R26Q5T8A7 1209 aaPredicted RBP18.03■□□□□ 0.48
CLN3-216ENST00000565316 KRT39Q6A163 491 aa18.03■□□□□ 0.48
CLN3-216ENST00000565316 MIB1Q86YT6 1006 aa18.03■□□□□ 0.48
CLN3-216ENST00000565316 JAKMIP2Q96AA8 810 aa18.03■□□□□ 0.48
CLN3-216ENST00000565316 BBS2Q9BXC9 721 aa18.03■□□□□ 0.48
CLN3-216ENST00000565316 DNAI2Q9GZS0 605 aa18.03■□□□□ 0.48
CLN3-216ENST00000565316 TMEM9BQ9NQ34 198 aa18.03■□□□□ 0.48
CLN3-216ENST00000565316 DNAJC17Q9NVM6 304 aaKnown RBP18.03■□□□□ 0.48
CLN3-216ENST00000565316 LSM7Q9UK45 103 aaKnown RBP18.03■□□□□ 0.48
CLN3-216ENST00000565316 CHD6Q8TD26 2715 aa18.03■□□□□ 0.48
CLN3-216ENST00000565316 PLXND1Q9Y4D7 1925 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 A0A1W2PQF6 199 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 NEDD8-MDP1E9PL57 170 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 MAP3K13O43283 966 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 ZNF202O95125 648 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 CISD3P0C7P0 127 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 GABRG2P18507 467 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 CD58P19256 250 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 PTGER3P43115 390 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 IRX4P78413 519 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 DAB2IPQ5VWQ8 1189 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 PEAR1Q5VY43 1037 aaPredicted RBP18.02■□□□□ 0.48
CLN3-216ENST00000565316 SYT12Q8IV01 421 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 TMEFF1Q8IYR6 380 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 TTC39CQ8N584 583 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 CCDC150Q8NCX0 1101 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 PIGKQ92643 395 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 SEMA4DQ92854 862 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 XPO6Q96QU8 1125 aaKnown RBP18.02■□□□□ 0.48
CLN3-216ENST00000565316 UBXN6Q9BZV1 441 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 FAM124BQ9H5Z6 455 aaPredicted RBP18.02■□□□□ 0.48
CLN3-216ENST00000565316 CLIC5Q9NZA1 410 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 FBXO10Q9UK96 956 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 ATP6V1DQ9Y5K8 247 aa18.02■□□□□ 0.48
CLN3-216ENST00000565316 FRYQ5TBA9 3013 aa18.02■□□□□ 0.47
CLN3-216ENST00000565316 PRRT4C9JH25 899 aa18.01■□□□□ 0.47
CLN3-216ENST00000565316 MDM4O15151 490 aa18.01■□□□□ 0.47
CLN3-216ENST00000565316 DPP6P42658 865 aa18.01■□□□□ 0.47
CLN3-216ENST00000565316 C10orf120Q5SQS8 335 aa18.01■□□□□ 0.47
CLN3-216ENST00000565316 EGFLAMQ63HQ2 1017 aa18.01■□□□□ 0.47
CLN3-216ENST00000565316 PSAPL1Q6NUJ1 521 aa18.01■□□□□ 0.47
CLN3-216ENST00000565316 TPGS1Q6ZTW0 290 aa18.01■□□□□ 0.47
CLN3-216ENST00000565316 TADA2BQ86TJ2 420 aa18.01■□□□□ 0.47
CLN3-216ENST00000565316 PGBD3Q8N328 593 aa18.01■□□□□ 0.47
CLN3-216ENST00000565316 P2RY11Q96G91 374 aa18.01■□□□□ 0.47
CLN3-216ENST00000565316 CDK5RAP1Q96SZ6 601 aaKnown RBP18.01■□□□□ 0.47
CLN3-216ENST00000565316 GABRG3Q99928 467 aa18.01■□□□□ 0.47
CLN3-216ENST00000565316 TMEM74BQ9NUR3 256 aa18.01■□□□□ 0.47
CLN3-216ENST00000565316 NAGPAQ9UK23 515 aa18.01■□□□□ 0.47
CLN3-216ENST00000565316 NUDT5Q9UKK9 219 aa18.01■□□□□ 0.47
CLN3-216ENST00000565316 GON4LQ3T8J9 2241 aa18.01■□□□□ 0.47
CLN3-216ENST00000565316 KRT37O76014 449 aa18■□□□□ 0.47
CLN3-216ENST00000565316 STC2O76061 302 aa18■□□□□ 0.47
CLN3-216ENST00000565316 HOXB2P14652 356 aa18■□□□□ 0.47
CLN3-216ENST00000565316 CSRP1P21291 193 aaKnown RBP18■□□□□ 0.47
CLN3-216ENST00000565316 HOXD12P35452 270 aa18■□□□□ 0.47
CLN3-216ENST00000565316 ST3GAL2Q16842 350 aa18■□□□□ 0.47
CLN3-216ENST00000565316 TOGARAM2Q6ZUX3 1019 aa18■□□□□ 0.47
CLN3-216ENST00000565316 SLC4A11Q8NBS3 891 aa18■□□□□ 0.47
CLN3-216ENST00000565316 FBXL13Q8NEE6 735 aa18■□□□□ 0.47
CLN3-216ENST00000565316 HEXIM2Q96MH2 286 aaKnown RBP18■□□□□ 0.47
CLN3-216ENST00000565316 ACOX2Q99424 681 aa18■□□□□ 0.47
CLN3-216ENST00000565316 MMRN2Q9H8L6 949 aa18■□□□□ 0.47
CLN3-216ENST00000565316 CISHQ9NSE2 258 aa18■□□□□ 0.47
CLN3-216ENST00000565316 CALCOCO1Q9P1Z2 691 aa18■□□□□ 0.47
CLN3-216ENST00000565316 PILRBQ9UKJ0 227 aa18■□□□□ 0.47
CLN3-216ENST00000565316 CIZ1Q9ULV3 898 aaPredicted RBP18■□□□□ 0.47
CLN3-216ENST00000565316 ZNF510Q9Y2H8 683 aa18■□□□□ 0.47
CLN3-216ENST00000565316 MYH10P35580 1976 aa18■□□□□ 0.47
CLN3-216ENST00000565316 STX10O60499 249 aa17.99■□□□□ 0.47
CLN3-216ENST00000565316 PENKP01210 267 aaPredicted RBP17.99■□□□□ 0.47
CLN3-216ENST00000565316 KLKB1P03952 638 aa17.99■□□□□ 0.47
CLN3-216ENST00000565316 RALAP11233 206 aa17.99■□□□□ 0.47
CLN3-216ENST00000565316 MXI1P50539 228 aa17.99■□□□□ 0.47
CLN3-216ENST00000565316 NOVA1P51513 510 aaKnown RBP17.99■□□□□ 0.47
CLN3-216ENST00000565316 RAD23BP54727 409 aa17.99■□□□□ 0.47
CLN3-216ENST00000565316 LMAN2Q12907 356 aa17.99■□□□□ 0.47
CLN3-216ENST00000565316 TRIM61Q5EBN2 209 aa17.99■□□□□ 0.47
CLN3-216ENST00000565316 RAB41Q5JT25 222 aa17.99■□□□□ 0.47
CLN3-216ENST00000565316 LYSMD4Q5XG99 296 aa17.99■□□□□ 0.47
CLN3-216ENST00000565316 ARHGAP17Q68EM7 881 aa17.99■□□□□ 0.47
CLN3-216ENST00000565316 SLC23A3Q6PIS1 610 aa17.99■□□□□ 0.47
CLN3-216ENST00000565316 SLC36A4Q6YBV0 504 aa17.99■□□□□ 0.47
CLN3-216ENST00000565316 ARMCX6Q7L4S7 300 aa17.99■□□□□ 0.47
CLN3-216ENST00000565316 TMEM176AQ96HP8 235 aa17.99■□□□□ 0.47
CLN3-216ENST00000565316 RAB20Q9NX57 234 aa17.99■□□□□ 0.47
CLN3-216ENST00000565316 TNRC6BQ9UPQ9 1833 aaKnown RBP17.99■□□□□ 0.47
CLN3-216ENST00000565316 GFRA2O00451 464 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 GIPC1O14908 333 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 CETN3O15182 167 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 AP5Z1O43299 807 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 ITPKAP23677 461 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 WASP42768 502 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 DGKGP49619 791 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 COG7P83436 770 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 ZNF394Q53GI3 561 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 COBLL1Q53SF7 1204 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms