RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PFKFB1P16118 471 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 CD58P19256 250 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 GCLMP48507 274 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 VAMP7P51809 220 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 PEAR1Q5VY43 1037 aaPredicted RBP17.78■□□□□ 0.44
CLN3-211ENST00000564091 HSCBQ8IWL3 235 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 IPO4Q8TEX9 1081 aaKnown RBP17.78■□□□□ 0.44
CLN3-211ENST00000564091 P2RY11Q96G91 374 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 GTPBP2Q9BX10 602 aaKnown RBP17.78■□□□□ 0.44
CLN3-211ENST00000564091 SLC6A17Q9H1V8 727 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 CD248Q9HCU0 757 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 PLK2Q9NYY3 685 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 MARK1Q9P0L2 795 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 WDR35Q9P2L0 1181 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 SLC6A14Q9UN76 642 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 CACNA1GO43497 2377 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 IGHV1OR15-9A0A0B4J2B8 117 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 ZBTB24O43167 697 aaPredicted RBP17.77■□□□□ 0.44
CLN3-211ENST00000564091 CALUO43852 315 aaPredicted RBP17.77■□□□□ 0.44
CLN3-211ENST00000564091 CISD3P0C7P0 127 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 NDUFV2P19404 249 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 ZNF33AQ06730 810 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 PPP3CAQ08209 521 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 GOLGA8FQ08AF8 430 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 GOLGA8DPQ0D2H9 430 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 INCA1Q0VD86 236 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 C10orf120Q5SQS8 335 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 SDE2Q6IQ49 451 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 SLC36A4Q6YBV0 504 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 TAS1R2Q8TE23 839 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 NT5C1AQ9BXI3 368 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 MMRN2Q9H8L6 949 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 CD93Q9NPY3 652 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.77■□□□□ 0.44
CLN3-211ENST00000564091 CACNA2D2Q9NY47 1150 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 CYP8B1Q9UNU6 501 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 TRAF3IP3Q9Y228 551 aa17.77■□□□□ 0.44
CLN3-211ENST00000564091 CACNA1EQ15878 2313 aa17.77■□□□□ 0.43
CLN3-211ENST00000564091 ZZEF1O43149 2961 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 SPAARA0A1B0GVQ0 90 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 WASH3PC4AMC7 463 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 KIF20AO95235 890 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 CMA1P23946 247 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 DPP6P42658 865 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 PLA2G4AP47712 749 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 KIF11P52732 1056 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 ATXN3P54252 364 aaPredicted RBP17.76■□□□□ 0.43
CLN3-211ENST00000564091 DUOXA1Q1HG43 343 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 SCD5Q86SK9 330 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 SLC41A1Q8IVJ1 513 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 GABRG3Q99928 467 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 SCNM1Q9BWG6 230 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 TMEM121BQ9BXQ6 578 aaPredicted RBP17.76■□□□□ 0.43
CLN3-211ENST00000564091 ADAM33Q9BZ11 813 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 SLC32A1Q9H598 525 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 CYP3A43Q9HB55 503 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 DNMT3LQ9UJW3 386 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 NAGPAQ9UK23 515 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 ZMIZ1Q9ULJ6 1067 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 MAPK8IP1Q9UQF2 711 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 PCDHA5Q9Y5H7 936 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 PTPRDP23468 1912 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 WDFY3Q8IZQ1 3526 aa17.76■□□□□ 0.43
CLN3-211ENST00000564091 CILPO75339 1184 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 ZNF217O75362 1048 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 SERPINF2P08697 491 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 PRR29P0C7W0 189 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 TRIM21P19474 475 aaKnown RBP17.75■□□□□ 0.43
CLN3-211ENST00000564091 NR2F2P24468 414 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 HOXD12P35452 270 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 DGKGP49619 791 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 GFPT1Q06210 699 aaPredicted RBP17.75■□□□□ 0.43
CLN3-211ENST00000564091 SEMA3BQ13214 749 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 ZNF394Q53GI3 561 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 KLHDC10Q6PID8 442 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 Q6ZNB5 142 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 HDDC3Q8N4P3 179 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 TRIML1Q8N9V2 468 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 OR2I1PQ8NGU4 316 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 CEP76Q8TAP6 659 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 IMPG2Q9BZV3 1241 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 NIF3L1Q9GZT8 377 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 CAPN10Q9HC96 672 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 HPSEQ9Y251 543 aa17.75■□□□□ 0.43
CLN3-211ENST00000564091 HYAL3O43820 417 aaPredicted RBP17.74■□□□□ 0.43
CLN3-211ENST00000564091 STC2O76061 302 aa17.74■□□□□ 0.43
CLN3-211ENST00000564091 KLKB1P03952 638 aa17.74■□□□□ 0.43
CLN3-211ENST00000564091 HMBSP08397 361 aa17.74■□□□□ 0.43
CLN3-211ENST00000564091 SIM1P81133 766 aaPredicted RBP17.74■□□□□ 0.43
CLN3-211ENST00000564091 PPP1R26Q5T8A7 1209 aaPredicted RBP17.74■□□□□ 0.43
CLN3-211ENST00000564091 INTS8Q75QN2 995 aaKnown RBP17.74■□□□□ 0.43
CLN3-211ENST00000564091 PIP4P1Q86T03 277 aa17.74■□□□□ 0.43
CLN3-211ENST00000564091 MRGPRX1Q96LB2 322 aa17.74■□□□□ 0.43
CLN3-211ENST00000564091 HSPA12BQ96MM6 686 aa17.74■□□□□ 0.43
CLN3-211ENST00000564091 DUSP16Q9BY84 665 aa17.74■□□□□ 0.43
CLN3-211ENST00000564091 PNPLA8Q9NP80 782 aa17.74■□□□□ 0.43
CLN3-211ENST00000564091 USP25Q9UHP3 1055 aa17.74■□□□□ 0.43
CLN3-211ENST00000564091 SPEGQ15772 3267 aa17.73■□□□□ 0.43
CLN3-211ENST00000564091 MAPK13O15264 365 aa17.73■□□□□ 0.43
CLN3-211ENST00000564091 MYL1P05976 194 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms