RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 BTBD18B2RXH4 712 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 H3BQF6 201 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 PPEF2O14830 753 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 IFIT3O14879 490 aaKnown RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 MPPED1O15442 326 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 POLR2DO15514 142 aaKnown RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 IGSF3O75054 1194 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 ERN1O75460 977 aaKnown RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 IDH1O75874 414 aaKnown RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 CD1AP06126 327 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 TUBBP07437 444 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 CYP19A1P11511 503 aaPredicted RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 FGFR4P22455 802 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 GUCY1A2P33402 732 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 CRHR1P34998 444 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 PTPN7P35236 360 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 KRT2P35908 639 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 FLT3P36888 993 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 IL6STP40189 918 aaPredicted RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 ARHGAP25P42331 645 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 TRAPPC10P48553 1259 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 NT5C2P49902 561 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 ADKP55263 362 aaKnown RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 GNG11P61952 73 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 HSD11B2P80365 405 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 PPARAQ07869 468 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 LAMB3Q13751 1172 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 LRRC32Q14392 662 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 SMC1AQ14683 1233 aaKnown RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 MTF1Q14872 753 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 WTAPQ15007 396 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 HLFQ16534 295 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 WHAMMP3Q1A5X7 153 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 FAM153CQ494X1 144 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 BEND6Q5SZJ8 279 aaPredicted RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 ISM2Q6H9L7 571 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 WDR93Q6P2C0 686 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 LDHAL6AQ6ZMR3 332 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 TOM1L2Q6ZVM7 507 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 TMTC3Q6ZXV5 915 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 UBE2R2Q712K3 238 aaPredicted RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 ZNF572Q7Z3I7 529 aaPredicted RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 AMIGO2Q86SJ2 522 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 PASD1Q8IV76 773 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 GRAMD1CQ8IYS0 662 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 ZNF34Q8IZ26 560 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 FAM177A1Q8N128 213 aaPredicted RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 TMTC2Q8N394 836 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 MAGEB6Q8N7X4 407 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 CEP112Q8N8E3 955 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 SPATA5Q8NB90 893 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 SMRP1Q8NCR6 262 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 CCDC12Q8WUD4 166 aaPredicted RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 PIGBQ92521 554 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 RUBCNQ92622 972 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 HMCESQ96FZ2 354 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 CCDC34Q96HJ3 373 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 CTAGE1Q96RT6 745 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 DNAJC7Q99615 494 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 PYM1Q9BRP8 204 aaKnown RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 DESI2Q9BSY9 194 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 PARD6BQ9BYG5 372 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 ANO3Q9BYT9 981 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 ARMT1Q9H993 441 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 ARFGAP3Q9NP61 516 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 CNNM1Q9NRU3 951 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 SAMSN1Q9NSI8 373 aaKnown RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 ABHD10Q9NUJ1 306 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 RBM28Q9NW13 759 aaKnown RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 LIMA1Q9UHB6 759 aaKnown RBP2.73□□□□□ -1.97
SPG11-223ENST00000560858 KCNJ14Q9UNX9 436 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 ZBTB1Q9Y2K1 713 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 NUMBLQ9Y6R0 609 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 SNED1Q8TER0 1413 aa2.73□□□□□ -1.97
SPG11-223ENST00000560858 PSME4Q14997 1843 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 ADAMTSL1Q8N6G6 1762 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 ZNFX1Q9P2E3 1918 aaKnown RBP2.72□□□□□ -1.97
SPG11-223ENST00000560858 TRGV11A0A075B6L2 103 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 A0A0U1RQJ8 604 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 ANO9A1A5B4 782 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 ERICH2A1L162 156 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 TARSL2A2RTX5 802 aaKnown RBP2.72□□□□□ -1.97
SPG11-223ENST00000560858 CTAGE9A4FU28 777 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 ERICH4A6NGS2 130 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 MYMKA6NI61 221 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 LINC01548A6NM66 108 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 LGALS16A8MUM7 142 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 PSMD14O00487 310 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 TEX33O43247 280 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 PRPF3O43395 683 aaKnown RBP2.72□□□□□ -1.97
SPG11-223ENST00000560858 PRKAB2O43741 272 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 KIF5CO60282 957 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 OPA1O60313 960 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 ERLIN1O75477 346 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 EIF3JO75822 258 aaKnown RBP2.72□□□□□ -1.97
SPG11-223ENST00000560858 STK10O94804 968 aaKnown RBP2.72□□□□□ -1.97
SPG11-223ENST00000560858 CLSTN1O94985 981 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 PLEKHA8P1O95397 391 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 NTSR2O95665 410 aa2.72□□□□□ -1.97
SPG11-223ENST00000560858 STARD3NLO95772 234 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms