RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 DOCK2Q92608 1830 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 PIWIL1Q96J94 861 aaKnown RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 CCDC77Q9BR77 488 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 PAPPA2Q9BXP8 1791 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 SARS2Q9NP81 518 aaKnown RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 IL23AQ9NPF7 189 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 PLSCR2Q9NRY7 297 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 SALL4Q9UJQ4 1053 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 SNX12Q9UMY4 172 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 SSX2IPQ9Y2D8 614 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 RIF1Q5UIP0 2472 aaKnown RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 EP300Q09472 2414 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 ADGRA2Q96PE1 1338 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 PABPN1LA6NDY0 278 aaKnown RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 F5H5T6 163 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 BEST1O76090 585 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 JCHAINP01591 159 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 PAEPP09466 180 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 PYGMP11217 842 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 CTNNA1P35221 906 aaKnown RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 ATP5C1P36542 298 aaKnown RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 SLC11A2P49281 568 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 SHHQ15465 462 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 TTC19Q6DKK2 380 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 FAM109BQ6ICB4 259 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 RNF19BQ6ZMZ0 732 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 GRASPQ7Z6J2 395 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 RTN4RL1Q86UN2 441 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 RNF10Q8N5U6 811 aaKnown RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 OR10T2Q8NGX3 314 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 MYCBPAPQ8TBZ2 947 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 MAIP1Q8WWC4 291 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 GAS2L1Q99501 681 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 CNPY3Q9BT09 278 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 RAB17Q9H0T7 212 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 WNT8AQ9H1J5 351 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 FEZ2Q9UHY8 353 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 KIAA1257Q9ULG3 409 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 LCHNA4D1U4 455 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 PITPNM1O00562 1244 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 BUD23O43709 281 aaKnown RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 XYLBO75191 536 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 PIAS1O75925 651 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 RARAP10276 462 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 GZMAP12544 262 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 KCNA5P22460 613 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 MCM3P25205 808 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 OR1E1P30953 314 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 CCR1P32246 355 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 PBX2P40425 430 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 IFNAR2P48551 515 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 MAMLD1Q13495 774 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 GEN1Q17RS7 908 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 CEP85LQ5SZL2 805 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 HECTD3Q5T447 861 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 HGSNATQ68CP4 663 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 SMYD5Q6GMV2 418 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 UNC93AQ86WB7 457 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 FUKQ8N0W3 1084 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 TOP6BLQ8N6T0 577 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 LRRN4CLQ8ND94 238 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 ACTL9Q8TC94 416 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 C9orf72Q96LT7 481 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 FBXL18Q96ME1 805 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 DUSP16Q9BY84 665 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 MAF1Q9H063 256 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 FBXO44Q9H4M3 255 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 POPDC2Q9HBU9 364 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 RGS18Q9NS28 235 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 OGDHLQ9ULD0 1010 aa5.66□□□□□ -1.5
VPS13C-209ENST00000560637 REXO2Q9Y3B8 237 aaKnown RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 MORC2Q9Y6X9 1032 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-209ENST00000560637 DNAH12Q6ZR08 3092 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP5.65□□□□□ -1.5
VPS13C-209ENST00000560637 ADAM12O43184 909 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 PROSCO94903 275 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 CPP00450 1065 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 PIGRP01833 764 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 KRT14P02533 472 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 MYZAPP0CAP1 466 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 SCNN1BP51168 640 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 KPNA1P52294 538 aaPredicted RBP5.65□□□□□ -1.5
VPS13C-209ENST00000560637 CSE1LP55060 971 aaKnown RBP5.65□□□□□ -1.5
VPS13C-209ENST00000560637 TAS2R40P59535 323 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 PITX1P78337 314 aaPredicted RBP5.65□□□□□ -1.5
VPS13C-209ENST00000560637 OTUD4Q01804 1114 aaKnown RBP5.65□□□□□ -1.5
VPS13C-209ENST00000560637 ZNF177Q13360 481 aaPredicted RBP5.65□□□□□ -1.5
VPS13C-209ENST00000560637 SPARCL1Q14515 664 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 CCDC157Q569K6 752 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 SYPL2Q5VXT5 272 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 SPRED2Q7Z698 418 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 HERC6Q8IVU3 1022 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 ZNF366Q8N895 744 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 MCUQ8NE86 351 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 SYN2Q92777 582 aaPredicted RBP5.65□□□□□ -1.5
VPS13C-209ENST00000560637 EXT2Q93063 718 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 TMA16Q96EY4 203 aaKnown RBP5.65□□□□□ -1.5
VPS13C-209ENST00000560637 ASIC4Q96FT7 647 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 IFT43Q96FT9 208 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms