RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CCDC122Q5T0U0 273 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 NUGGCQ68CJ6 796 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 MSANTD2Q6P1R3 559 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 DCUN1D2Q6PH85 259 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 WDR59Q6PJI9 974 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 BHLHA9Q7RTU4 235 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 MIB1Q86YT6 1006 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 TMTC1Q8IUR5 882 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 CCDC170Q8IYT3 715 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 MCOLN2Q8IZK6 566 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 TXLNBQ8N3L3 684 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 CCDC112Q8NEF3 446 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 BPIFB1Q8TDL5 484 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 EDEM1Q92611 657 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 FGF14Q92915 247 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 USP13Q92995 863 aaPredicted RBP10.53□□□□□ -0.72
USP3-216ENST00000559873 PLD4Q96BZ4 506 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 ZSWIM3Q96MP5 696 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 SLC2A13Q96QE2 648 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 BAG1Q99933 345 aaPredicted RBP10.53□□□□□ -0.72
USP3-216ENST00000559873 KXD1Q9BQD3 176 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 DCLK3Q9C098 648 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 SMOC2Q9H3U7 446 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 KCNK12Q9HB15 430 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 MRPL47Q9HD33 250 aaKnown RBP10.53□□□□□ -0.72
USP3-216ENST00000559873 METTL5Q9NRN9 209 aaKnown RBP10.53□□□□□ -0.72
USP3-216ENST00000559873 PARVAQ9NVD7 372 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 OSER1Q9NX31 292 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 SMPD4Q9NXE4 827 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 MARCH2Q9P0N8 246 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 LIMD1Q9UGP4 676 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 SORCS3Q9UPU3 1222 aa10.53□□□□□ -0.72
USP3-216ENST00000559873 HBS1LQ9Y450 684 aaKnown RBP10.53□□□□□ -0.72
USP3-216ENST00000559873 A0A087X0T9 212 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 HEPACAM2A8MVW5 462 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 LEFTY2O00292 366 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 NRG2O14511 850 aaPredicted RBP10.52□□□□□ -0.73
USP3-216ENST00000559873 GRAP2O75791 330 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 GABBR2O75899 941 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 FTLP02792 175 aaPredicted RBP10.52□□□□□ -0.73
USP3-216ENST00000559873 FAM228BP0C875 321 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 KRT3P12035 628 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 FCARP24071 287 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 NOS2P35228 1153 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 MATKP42679 507 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 IFNAR2P48551 515 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 PFKPQ01813 784 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 GFPT1Q06210 699 aaPredicted RBP10.52□□□□□ -0.73
USP3-216ENST00000559873 FCHO2Q0JRZ9 810 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 TDGQ13569 410 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 MTF1Q14872 753 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 SPA17Q15506 151 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 ZNF77Q15935 545 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 DCAF6Q58WW2 860 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 C10orf76Q5T2E6 689 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 PARM1Q6UWI2 310 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 HFE2Q6ZVN8 426 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 SND1Q7KZF4 910 aaKnown RBP eCLIP10.52□□□□□ -0.73
USP3-216ENST00000559873 MFSD6LQ8IWD5 586 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 DEFB106AQ8N104 65 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 TTC16Q8NEE8 873 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 OLIG1Q8TAK6 271 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 DQX1Q8TE96 717 aaKnown RBP10.52□□□□□ -0.73
USP3-216ENST00000559873 SH3RF2Q8TEC5 729 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 CTNNBL1Q8WYA6 563 aaPredicted RBP10.52□□□□□ -0.73
USP3-216ENST00000559873 NDRG1Q92597 394 aaKnown RBP10.52□□□□□ -0.73
USP3-216ENST00000559873 IRF7Q92985 503 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 PIWIL1Q96J94 861 aaKnown RBP10.52□□□□□ -0.73
USP3-216ENST00000559873 SLC22A12Q96S37 553 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 CYP2S1Q96SQ9 504 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 TRMT61BQ9BVS5 477 aaKnown RBP10.52□□□□□ -0.73
USP3-216ENST00000559873 SMG9Q9H0W8 520 aaKnown RBP10.52□□□□□ -0.73
USP3-216ENST00000559873 ISCUQ9H1K1 167 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.52□□□□□ -0.73
USP3-216ENST00000559873 TBC1D14Q9P2M4 693 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 CNOT8Q9UFF9 292 aaKnown RBP10.52□□□□□ -0.73
USP3-216ENST00000559873 ZNF510Q9Y2H8 683 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 PRUNE2Q8WUY3 3088 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 REV3LO60673 3130 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 DENND4CQ5VZ89 1909 aa10.52□□□□□ -0.73
USP3-216ENST00000559873 ANAPC1Q9H1A4 1944 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 SLC12A8A0AV02 714 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 E2F8A0AVK6 867 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 FAM170AA1A519 330 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 SIGLEC16A6NMB1 481 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 ZNF263O14978 683 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 CHADO15335 359 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 TRUB2O95900 331 aaKnown RBP10.51□□□□□ -0.73
USP3-216ENST00000559873 F9P00740 461 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 APOEP02649 317 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 H2AFZP0C0S5 128 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 IRF1P10914 325 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 SLC2A3P11169 496 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 ABCB4P21439 1286 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 FECHP22830 423 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 RRM1P23921 792 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 VIPR2P41587 438 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 HARS2P49590 506 aaKnown RBP10.51□□□□□ -0.73
USP3-216ENST00000559873 PGFP49763 221 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 SULT1E1P49888 294 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms