RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 CINPQ9BW66 212 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-208ENST00000559119 SCNM1Q9BWG6 230 aa5.45□□□□□ -1.54
VPS13C-208ENST00000559119 TMEM60Q9H2L4 133 aa5.45□□□□□ -1.54
VPS13C-208ENST00000559119 FAM83DQ9H4H8 585 aa5.45□□□□□ -1.54
VPS13C-208ENST00000559119 MLXIPQ9HAP2 919 aa5.45□□□□□ -1.54
VPS13C-208ENST00000559119 SEMA4BQ9NPR2 832 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-208ENST00000559119 ZBTB40Q9NUA8 1239 aa5.45□□□□□ -1.54
VPS13C-208ENST00000559119 TMEM45AQ9NWC5 275 aa5.45□□□□□ -1.54
VPS13C-208ENST00000559119 FAM227AF5H4B4 570 aa5.44□□□□□ -1.54
VPS13C-208ENST00000559119 USP12O75317 370 aa5.44□□□□□ -1.54
VPS13C-208ENST00000559119 RFPL1O75677 317 aa5.44□□□□□ -1.54
VPS13C-208ENST00000559119 INMTO95050 263 aa5.44□□□□□ -1.54
VPS13C-208ENST00000559119 SYF2O95926 243 aaKnown RBP5.44□□□□□ -1.54
VPS13C-208ENST00000559119 PLAUP00749 431 aa5.44□□□□□ -1.54
VPS13C-208ENST00000559119 NTSR1P30989 418 aa5.44□□□□□ -1.54
VPS13C-208ENST00000559119 JAK3P52333 1124 aa5.44□□□□□ -1.54
VPS13C-208ENST00000559119 B4GALNT1Q00973 533 aa5.44□□□□□ -1.54
VPS13C-208ENST00000559119 CCDC15Q0P6D6 951 aa5.44□□□□□ -1.54
VPS13C-208ENST00000559119 EARS2Q5JPH6 523 aaKnown RBP5.44□□□□□ -1.54
VPS13C-208ENST00000559119 C3orf38Q5JPI3 329 aa5.44□□□□□ -1.54
VPS13C-208ENST00000559119 SWSAP1Q6NVH7 229 aa5.44□□□□□ -1.54
VPS13C-208ENST00000559119 USP49Q70CQ1 688 aa5.44□□□□□ -1.54
VPS13C-208ENST00000559119 GPATCH3Q96I76 525 aa5.44□□□□□ -1.54
VPS13C-208ENST00000559119 DNAJB11Q9UBS4 358 aa5.44□□□□□ -1.54
VPS13C-208ENST00000559119 MID2Q9UJV3 735 aa5.44□□□□□ -1.54
VPS13C-208ENST00000559119 C2CD4BA6NLJ0 364 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 CA12O43570 354 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 TXNP10599 105 aaKnown RBP5.43□□□□□ -1.54
VPS13C-208ENST00000559119 IL6STP40189 918 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-208ENST00000559119 ANAPC15P60006 121 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 RPS16P62249 146 aaKnown RBP5.43□□□□□ -1.54
VPS13C-208ENST00000559119 CNGA2Q16280 664 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 UBAP2Q5T6F2 1119 aaKnown RBP5.43□□□□□ -1.54
VPS13C-208ENST00000559119 MZT2AQ6P582 158 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 APOA5Q6Q788 366 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 FAM57BQ71RH2 274 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 P3H2Q8IVL5 708 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 KIAA0319LQ8IZA0 1049 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 IGFBPL1Q8WX77 278 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 SLC25A28Q96A46 364 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 TRMT61AQ96FX7 289 aaKnown RBP5.43□□□□□ -1.54
VPS13C-208ENST00000559119 TM2D2Q9BX73 214 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 CDH19Q9H159 772 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 DKK4Q9UBT3 224 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 ZNF112Q9UJU3 913 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 ITGB1BP2Q9UKP3 347 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 SLC27A6Q9Y2P4 619 aa5.43□□□□□ -1.54
VPS13C-208ENST00000559119 FRS3O43559 492 aa5.42□□□□□ -1.54
VPS13C-208ENST00000559119 PRAMEF2O60811 474 aa5.42□□□□□ -1.54
VPS13C-208ENST00000559119 TMEM225BP0DP42 221 aa5.42□□□□□ -1.54
VPS13C-208ENST00000559119 RBL1P28749 1068 aa5.42□□□□□ -1.54
VPS13C-208ENST00000559119 CDC25AP30304 524 aa5.42□□□□□ -1.54
VPS13C-208ENST00000559119 CLCA4Q14CN2 919 aa5.42□□□□□ -1.54
VPS13C-208ENST00000559119 PELI3Q8N2H9 469 aa5.42□□□□□ -1.54
VPS13C-208ENST00000559119 BCAS4Q8TDM0 211 aa5.42□□□□□ -1.54
VPS13C-208ENST00000559119 VPS33BQ9H267 617 aa5.42□□□□□ -1.54
VPS13C-208ENST00000559119 ZIM2Q9NZV7 527 aa5.42□□□□□ -1.54
VPS13C-208ENST00000559119 OGDHLQ9ULD0 1010 aa5.42□□□□□ -1.54
VPS13C-208ENST00000559119 PROCRQ9UNN8 238 aa5.42□□□□□ -1.54
VPS13C-208ENST00000559119 TTBK1Q5TCY1 1321 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-208ENST00000559119 SPATA31A1Q5TZJ5 1347 aa5.42□□□□□ -1.54
VPS13C-208ENST00000559119 RRHO14718 337 aa5.41□□□□□ -1.54
VPS13C-208ENST00000559119 PRPF3O43395 683 aaKnown RBP5.41□□□□□ -1.54
VPS13C-208ENST00000559119 PDGFRBP09619 1106 aa5.41□□□□□ -1.54
VPS13C-208ENST00000559119 U2AF1L5P0DN76 240 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-208ENST00000559119 TNFRSF1BP20333 461 aa5.41□□□□□ -1.54
VPS13C-208ENST00000559119 YY1P25490 414 aa5.41□□□□□ -1.54
VPS13C-208ENST00000559119 GALNSP34059 522 aa5.41□□□□□ -1.54
VPS13C-208ENST00000559119 SLC12A2P55011 1212 aa5.41□□□□□ -1.54
VPS13C-208ENST00000559119 WDR5P61964 334 aaKnown RBP5.41□□□□□ -1.54
VPS13C-208ENST00000559119 U2AF1Q01081 240 aaKnown RBP eCLIP5.41□□□□□ -1.54
VPS13C-208ENST00000559119 PRTGQ2VWP7 1150 aa5.41□□□□□ -1.54
VPS13C-208ENST00000559119 PLAG1Q6DJT9 500 aa5.41□□□□□ -1.54
VPS13C-208ENST00000559119 FSTL5Q8N475 847 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-208ENST00000559119 WIPF2Q8TF74 440 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-208ENST00000559119 IPCEF1Q8WWN9 437 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-208ENST00000559119 PIGKQ92643 395 aa5.41□□□□□ -1.54
VPS13C-208ENST00000559119 RUNDC1Q96C34 613 aa5.41□□□□□ -1.54
VPS13C-208ENST00000559119 CAMK1GQ96NX5 476 aa5.41□□□□□ -1.54
VPS13C-208ENST00000559119 FCRL5Q96RD9 977 aa5.41□□□□□ -1.54
VPS13C-208ENST00000559119 CHST8Q9H2A9 424 aa5.41□□□□□ -1.54
VPS13C-208ENST00000559119 DECR2Q9NUI1 292 aa5.41□□□□□ -1.54
VPS13C-208ENST00000559119 L1RE1Q9UN81 338 aa5.41□□□□□ -1.54
VPS13C-208ENST00000559119 HEMK1Q9Y5R4 338 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-208ENST00000559119 SIRT4Q9Y6E7 314 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-208ENST00000559119 hCG_2014768A0A024R1R8 64 aa5.4□□□□□ -1.54
VPS13C-208ENST00000559119 LACTBL1A8MY62 500 aa5.4□□□□□ -1.54
VPS13C-208ENST00000559119 FOXN3O00409 490 aaPredicted RBP5.4□□□□□ -1.54
VPS13C-208ENST00000559119 TMIGD3P0DMS9 266 aaPredicted RBP5.4□□□□□ -1.54
VPS13C-208ENST00000559119 TGFB3P10600 412 aa5.4□□□□□ -1.54
VPS13C-208ENST00000559119 BTF3P20290 206 aaKnown RBP5.4□□□□□ -1.54
VPS13C-208ENST00000559119 ALDH7A1P49419 539 aaKnown RBP5.4□□□□□ -1.54
VPS13C-208ENST00000559119 EPHB1P54762 984 aa5.4□□□□□ -1.54
VPS13C-208ENST00000559119 FMO1Q01740 532 aa5.4□□□□□ -1.54
VPS13C-208ENST00000559119 KCNAB1Q14722 419 aa5.4□□□□□ -1.54
VPS13C-208ENST00000559119 B4GALNT4Q76KP1 1039 aa5.4□□□□□ -1.54
VPS13C-208ENST00000559119 ZPBPQ9BS86 351 aa5.4□□□□□ -1.54
VPS13C-208ENST00000559119 TUBB6Q9BUF5 446 aa5.4□□□□□ -1.54
VPS13C-208ENST00000559119 LRRC27Q9C0I9 530 aa5.4□□□□□ -1.54
VPS13C-208ENST00000559119 FAM204AQ9H8W3 233 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms