RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 HDAC4P56524 1084 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 RWDD2BP57060 319 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 TAS2R40P59535 323 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 DEUP1Q05D60 604 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 ODF2Q5BJF6 829 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 SNX30Q5VWJ9 437 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 MSANTD2Q6P1R3 559 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 CPNE8Q86YQ8 564 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 DQX1Q8TE96 717 aaKnown RBP17.59■□□□□ 0.41
SNX1-203ENST00000558040 OSBPL9Q96SU4 736 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 SMOC2Q9H3U7 446 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.59■□□□□ 0.41
SNX1-203ENST00000558040 DDIT4Q9NX09 232 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 DDX56Q9NY93 547 aaKnown RBP17.59■□□□□ 0.41
SNX1-203ENST00000558040 USP18Q9UMW8 372 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 RFXAPO00287 272 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 CES2O00748 559 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 FGF19O95750 216 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 TRUB2O95900 331 aaKnown RBP17.58■□□□□ 0.4
SNX1-203ENST00000558040 POU2F2P09086 479 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 GJC1P36383 396 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 TUBP50607 506 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 AMPD2Q01433 879 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 SLC25A11Q02978 314 aaKnown RBP17.58■□□□□ 0.4
SNX1-203ENST00000558040 NME3Q13232 169 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 ZFYVE27Q5T4F4 411 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 SH3PXD2AQ5TCZ1 1133 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 DAB2IPQ5VWQ8 1189 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 SCYL2Q6P3W7 929 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 BNIPLQ7Z465 357 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 ZNF276Q8N554 614 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 ARFGAP1Q8N6T3 406 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 KRT35Q92764 455 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 PBKQ96KB5 322 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 SERPINB11Q96P15 392 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 GCNAQ96QF7 691 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 CARD9Q9H257 536 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 NSUN3Q9H649 340 aaKnown RBP17.58■□□□□ 0.4
SNX1-203ENST00000558040 ASAH2Q9NR71 780 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 OSER1Q9NX31 292 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 COLQQ9Y215 455 aaPredicted RBP17.58■□□□□ 0.4
SNX1-203ENST00000558040 MTCL1Q9Y4B5 1905 aaKnown RBP17.58■□□□□ 0.4
SNX1-203ENST00000558040 PDE4DIPQ5VU43 2346 aa17.58■□□□□ 0.4
SNX1-203ENST00000558040 ZNF638Q14966 1978 aaKnown RBP17.57■□□□□ 0.4
SNX1-203ENST00000558040 SYNJ2BP-COX16A0A087WUM0 186 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 ZNF840PA6NDX5 716 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 CCL16O15467 120 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 SRGAP2BP0DMP2 458 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 TFE3P19532 575 aaPredicted RBP17.57■□□□□ 0.4
SNX1-203ENST00000558040 CDC25CP30307 473 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 CETN2P41208 172 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 PGFP49763 221 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 BOLA3Q53S33 107 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 C10orf120Q5SQS8 335 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 HECTD3Q5T447 861 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 OTUD1Q5VV17 481 aaPredicted RBP17.57■□□□□ 0.4
SNX1-203ENST00000558040 TAC4Q86UU9 113 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 KATNAL2Q8IYT4 538 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 LEMD2Q8NC56 503 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 TEKT4Q8WW24 435 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 CASP10Q92851 521 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 PSMB7Q99436 277 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 ZWILCHQ9H900 591 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 DZANK1Q9NVP4 752 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.57■□□□□ 0.4
SNX1-203ENST00000558040 LMCD1Q9NZU5 365 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 COX16Q9P0S2 106 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 PCSK1NQ9UHG2 260 aa17.57■□□□□ 0.4
SNX1-203ENST00000558040 IRAK2O43187 625 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 TLR5O60602 858 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 IGLV3-25P01717 112 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 KRT1P04264 644 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 TCF4P15884 667 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 PTPN2P17706 415 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 MARCKSL1P49006 195 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 PEX5P50542 639 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 AIF1P55008 147 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 PITX1P78337 314 aaPredicted RBP17.56■□□□□ 0.4
SNX1-203ENST00000558040 NNTQ13423 1086 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 ARL13BQ3SXY8 428 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 SEL1L2Q5TEA6 688 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 KLHDC10Q6PID8 442 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 ADAM32Q8TC27 787 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 ALG3Q92685 438 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 RBM41Q96IZ5 413 aaKnown RBP17.56■□□□□ 0.4
SNX1-203ENST00000558040 CORO1BQ9BR76 489 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 NACA2Q9H009 215 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 ZNF334Q9HCZ1 680 aaPredicted RBP17.56■□□□□ 0.4
SNX1-203ENST00000558040 PIGVQ9NUD9 493 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 CDC23Q9UJX2 597 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 ATG2AQ2TAZ0 1938 aa17.56■□□□□ 0.4
SNX1-203ENST00000558040 MDM4O15151 490 aa17.55■□□□□ 0.4
SNX1-203ENST00000558040 RFPL2O75678 378 aa17.55■□□□□ 0.4
SNX1-203ENST00000558040 F11P03951 625 aa17.55■□□□□ 0.4
SNX1-203ENST00000558040 SLC2A3P11169 496 aa17.55■□□□□ 0.4
SNX1-203ENST00000558040 IL1R2P27930 398 aa17.55■□□□□ 0.4
SNX1-203ENST00000558040 GABRR2P28476 465 aa17.55■□□□□ 0.4
SNX1-203ENST00000558040 CXCR5P32302 372 aa17.55■□□□□ 0.4
SNX1-203ENST00000558040 ATP5C1P36542 298 aaKnown RBP17.55■□□□□ 0.4
SNX1-203ENST00000558040 KPNA1P52294 538 aaPredicted RBP17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms