RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 ZMIZ2Q8NF64 920 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 SCFD1Q8WVM8 642 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 FOXJ1Q92949 421 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 BHMTQ93088 406 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 HPS3Q969F9 1004 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 TOE1Q96GM8 510 aaKnown RBP8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 GPR174Q9BXC1 333 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 ZDHHC5Q9C0B5 715 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 MIR1-1HGQ9H1L0 117 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 GAREM1Q9H706 876 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 SMYD3Q9H7B4 428 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 PRDM16Q9HAZ2 1276 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 TM7SF3Q9NS93 570 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 WSB2Q9NYS7 404 aaPredicted RBP8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 IL37Q9NZH6 218 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 HSPBP1Q9NZL4 362 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 MARK1Q9P0L2 795 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 KIAA1522Q9P206 1035 aaPredicted RBP8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 FBXO2Q9UK22 296 aaPredicted RBP8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 BTBD3Q9Y2F9 522 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 PCDHB13Q9Y5F0 798 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 ATP6V1DQ9Y5K8 247 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 MGAQ8IWI9 3026 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 SPTA1P02549 2419 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 A0A087WV48 116 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 A0A087X0B3 334 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 FAM149AA5PLN7 773 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 TRABD2BA6NFA1 517 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 ZNF233A6NK53 670 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 EIF4E1BA6NMX2 242 aaKnown RBP8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 GOLGA8CPA6NN73 597 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 A8MXQ7 604 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 KIAA0391O15091 583 aaKnown RBP8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 ZBTB24O43167 697 aaPredicted RBP8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 TLR5O60602 858 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 C1QL1O75973 258 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 CER1O95813 267 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 TBX18O95935 607 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 CISD3P0C7P0 127 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 ZNF883P0CG24 379 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 DLATP10515 647 aaKnown RBP8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 PDCP20941 246 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 MATKP42679 507 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 TNNC1P63316 161 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 CAMK2BQ13554 666 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 SURF1Q15526 300 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 WDR72Q3MJ13 1102 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 DCAF12L1Q5VU92 463 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 RRAGBQ5VZM2 374 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 NUDT18Q6ZVK8 323 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 HTR3DQ70Z44 454 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 SV2BQ7L1I2 683 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 CACUL1Q86Y37 369 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 ELMO3Q96BJ8 720 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 TMX3Q96JJ7 454 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 CLIC6Q96NY7 704 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 XPO6Q96QU8 1125 aaKnown RBP8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 CGRRF1Q99675 332 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 KLF16Q9BXK1 252 aaPredicted RBP8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 MKRN2Q9H000 416 aaKnown RBP8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 NACA2Q9H009 215 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 GZF1Q9H116 711 aaPredicted RBP8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 XYLT2Q9H1B5 865 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 DMAP1Q9NPF5 467 aaPredicted RBP8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 KRT82Q9NSB4 513 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 PANK4Q9NVE7 773 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 PLK2Q9NYY3 685 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 NFE2L3Q9Y4A8 694 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 CLIC4Q9Y696 253 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 STON1Q9Y6Q2 735 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 PTPN13Q12923 2485 aa8.64□□□□□ -1.03
CCDC88C-214ENST00000557507 ATP8B3O60423 1300 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 HECTD1Q9ULT8 2610 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 A0A1B0GVT2 93 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 GFRA2O00451 464 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 MDM4O15151 490 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 BCAT2O15382 392 aaPredicted RBP8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 FLRT2O43155 660 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 AP1G2O75843 785 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 BEST1O76090 585 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 CCDC130P13994 396 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 IL12RB1P42701 662 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 DGKGP49619 791 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 TPMTP51580 245 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 CDH8P55286 799 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 MYL6P60660 151 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 CUL4AQ13619 759 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 SNRNP35Q16560 246 aaKnown RBP8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 HLA-BQ31612 363 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 LAYNQ6UX15 382 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 SCARA5Q6ZMJ2 495 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 Q6ZNB5 142 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 DBX2Q6ZNG2 339 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 GPRIN1Q7Z2K8 1008 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 BRAPQ7Z569 592 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 METTL3Q86U44 580 aaKnown RBP8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 FUKQ8N0W3 1084 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 RDH13Q8NBN7 331 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 C1orf216Q8TAB5 229 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 ZNF516Q92618 1163 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms