RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	KIAA1522	Q9P206	1035 aa	Predicted RBP	13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	NFE2L3	Q9Y4A8	694 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	ZFYVE26	Q68DK2	2539 aa		13.37	□□□□□ -0.27
SHMT2-223	ENST00000556689	MYO18A	Q92614	2054 aa	Known RBP	13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	CBFA2T3	O75081	653 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	BEST1	O76090	585 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	PLA2G4A	P47712	749 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	ZNF132	P52740	706 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	AP3M2	P53677	418 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	MAP3K7CL	P57077	242 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	ASIC1	P78348	528 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	BIRC3	Q13489	604 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	STARD3	Q14849	445 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	COL28A1	Q2UY09	1125 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	ZNF699	Q32M78	642 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	SOWAHC	Q53LP3	525 aa	Predicted RBP	13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	FAM26F	Q5R3K3	315 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	PDZD3	Q86UT5	571 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	ZMIZ2	Q8NF64	920 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	CADM4	Q8NFZ8	388 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	SETD7	Q8WTS6	366 aa	Known RBP	13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	USP28	Q96RU2	1077 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	GPR174	Q9BXC1	333 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	GZF1	Q9H116	711 aa	Predicted RBP	13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	CUEDC2	Q9H467	287 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	PRDM16	Q9HAZ2	1276 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	CYLD	Q9NQC7	956 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	KRT82	Q9NSB4	513 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	WSB2	Q9NYS7	404 aa	Predicted RBP	13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	CGN	Q9P2M7	1197 aa	Known RBP	13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	PCOLCE2	Q9UKZ9	415 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	SCML2	Q9UQR0	700 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	STON1	Q9Y6Q2	735 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	PLXND1	Q9Y4D7	1925 aa		13.36	□□□□□ -0.27
SHMT2-223	ENST00000556689	PKD1L2	Q7Z442	2459 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	ADAMTS9	Q9P2N4	1935 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	MEI4	A8MW99	385 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	NPC1	O15118	1278 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	EXOC3	O60645	756 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	NCAM1	P13591	858 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	P4HA1	P13674	534 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	SYT1	P21579	422 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	OXTR	P30559	389 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	CASP4	P49662	377 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	CUL4A	Q13619	759 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	NCOA4	Q13772	614 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	BMT2	Q1RMZ1	405 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	FUT11	Q495W5	492 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	CNNM4	Q6P4Q7	775 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	SCARA5	Q6ZMJ2	495 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	CRYBG2	Q8N1P7	616 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	SLC2A14	Q8TDB8	520 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	HNRNPLL	Q8WVV9	542 aa	Known RBP	13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	BHMT	Q93088	406 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	SDCBP2	Q9H190	292 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	MIR1-1HG	Q9H1L0	117 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	GAREM1	Q9H706	876 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	OSER1	Q9NX31	292 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	PLK2	Q9NYY3	685 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	USP36	Q9P275	1121 aa	Known RBP	13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	DNMT3L	Q9UJW3	386 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	FBXO10	Q9UK96	956 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	UBE4B	O95155	1302 aa		13.35	□□□□□ -0.27
SHMT2-223	ENST00000556689	PCDH15	Q96QU1	1955 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	LOC400499	M0QZD8	3231 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	METTL12	A8MUP2	240 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	BCAT2	O15382	392 aa	Predicted RBP	13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	SYNCRIP	O60506	623 aa	Known RBP	13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	C4BPA	P04003	597 aa	Known RBP	13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	ZNF883	P0CG24	379 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	CCDC130	P13994	396 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	MATK	P42679	507 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	E2F4	Q16254	413 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	SGSM1	Q2NKQ1	1148 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	KLHDC10	Q6PID8	442 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	IL27RA	Q6UWB1	636 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	TMPRSS6	Q8IU80	811 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	C12orf56	Q8IXR9	622 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	C12orf29	Q8N999	325 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	IQUB	Q8NA54	791 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	MDM1	Q8TC05	714 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	PARD3B	Q8TEW8	1205 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	ELMO3	Q96BJ8	720 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	DHX58	Q96C10	678 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	SIPA1	Q96FS4	1042 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	C7orf25	Q9BPX7	421 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	NUP58	Q9BVL2	599 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	MKRN2	Q9H000	416 aa	Known RBP	13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	IL21R	Q9HBE5	538 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	TM7SF3	Q9NS93	570 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	SLC27A6	Q9Y2P4	619 aa		13.34	□□□□□ -0.27
SHMT2-223	ENST00000556689	KCNJ18	B7U540	433 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	CER1	O95813	267 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	FAM200B	P0CF97	657 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	RARG	P13631	454 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	TRIM21	P19474	475 aa	Known RBP	13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	ACO1	P21399	889 aa	Known RBP	13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	TPMT	P51580	245 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	NDST1	P52848	882 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	CLDN10	P78369	228 aa		13.33	□□□□□ -0.28

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