RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 TMEM119Q4V9L6 283 aa5.38□□□□□ -1.55
SCFD1-221ENST00000556534 PRAMEF17Q5VTA0 474 aa5.38□□□□□ -1.55
SCFD1-221ENST00000556534 ZNF66Q6ZN08 573 aa5.38□□□□□ -1.55
SCFD1-221ENST00000556534 CHSY1Q86X52 802 aa5.38□□□□□ -1.55
SCFD1-221ENST00000556534 IPO4Q8TEX9 1081 aaKnown RBP5.38□□□□□ -1.55
SCFD1-221ENST00000556534 ABHD5Q8WTS1 349 aa5.38□□□□□ -1.55
SCFD1-221ENST00000556534 EDC3Q96F86 508 aaKnown RBP5.38□□□□□ -1.55
SCFD1-221ENST00000556534 KAZALD1Q96I82 304 aa5.38□□□□□ -1.55
SCFD1-221ENST00000556534 TTLL2Q9BWV7 592 aa5.38□□□□□ -1.55
SCFD1-221ENST00000556534 ABHD14A-ACY1A0A1B0GW23 586 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 PRAMEF2O60811 474 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 LATS1O95835 1130 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 COPB1P53618 953 aaKnown RBP5.37□□□□□ -1.55
SCFD1-221ENST00000556534 C21orf58P58505 322 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 RHBDL3P58872 404 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 GPC5P78333 572 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 TXNL4AP83876 142 aaKnown RBP5.37□□□□□ -1.55
SCFD1-221ENST00000556534 SLC10A2Q12908 348 aaPredicted RBP5.37□□□□□ -1.55
SCFD1-221ENST00000556534 COLEC12Q5KU26 742 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 FAM90A2PQ658T7 463 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 DPY19L2P1Q6NXN4 242 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 ZNF575Q86XF7 245 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 SPICE1Q8N0Z3 855 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 SAMD3Q8N6K7 520 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 MAFAQ8NHW3 353 aaPredicted RBP5.37□□□□□ -1.55
SCFD1-221ENST00000556534 TMEM41AQ96HV5 264 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 VPS50Q96JG6 964 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 ARFGAP3Q9NP61 516 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 GAR1Q9NY12 217 aaKnown RBP5.37□□□□□ -1.55
SCFD1-221ENST00000556534 FRMD4BQ9Y2L6 1034 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 DTNAQ9Y4J8 743 aa5.37□□□□□ -1.55
SCFD1-221ENST00000556534 CGB1A6NKQ9 187 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 POC1B-GALNT4F8VUJ3 575 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 MASP2O00187 686 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 ADAMTS3O15072 1205 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 MT-CO3P00414 261 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 VIPP01282 170 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 MBPP02686 304 aaPredicted RBP5.36□□□□□ -1.55
SCFD1-221ENST00000556534 CHRM5P08912 532 aaPredicted RBP5.36□□□□□ -1.55
SCFD1-221ENST00000556534 SETSIPP0DME0 302 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 TUBA4AP68366 448 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 CFHR3Q02985 330 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 KCNJ12Q14500 433 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 LARS2Q15031 903 aaKnown RBP5.36□□□□□ -1.55
SCFD1-221ENST00000556534 BRD3Q15059 726 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 FAM187BQ17R55 369 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 ARL6IP4Q66PJ3 421 aaKnown RBP5.36□□□□□ -1.55
SCFD1-221ENST00000556534 GALNT4Q8N4A0 578 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 PNLDC1Q8NA58 520 aaKnown RBP5.36□□□□□ -1.55
SCFD1-221ENST00000556534 ACRBPQ8NEB7 543 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 GRAMD1AQ96CP6 724 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 PRR11Q96HE9 360 aaPredicted RBP5.36□□□□□ -1.55
SCFD1-221ENST00000556534 MPHOSPH6Q99547 160 aaKnown RBP5.36□□□□□ -1.55
SCFD1-221ENST00000556534 WDR12Q9GZL7 423 aaKnown RBP5.36□□□□□ -1.55
SCFD1-221ENST00000556534 SAP30LQ9HAJ7 183 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 VPS45Q9NRW7 570 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 IGSF9Q9P2J2 1179 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 TAGLN3Q9UI15 199 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 CA14Q9ULX7 337 aa5.36□□□□□ -1.55
SCFD1-221ENST00000556534 A0A087WV62 115 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 BTBD19C9JJ37 291 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 H3BNC9 293 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 ZSCAN9O15535 394 aaPredicted RBP5.35□□□□□ -1.55
SCFD1-221ENST00000556534 USP1O94782 785 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 ZNF37AP17032 561 aaPredicted RBP5.35□□□□□ -1.55
SCFD1-221ENST00000556534 ATF7P17544 494 aaPredicted RBP5.35□□□□□ -1.55
SCFD1-221ENST00000556534 DRD1P21728 446 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 TECP42680 631 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 DGKQP52824 942 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 DNASE1L3Q13609 305 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 STARD3Q14849 445 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 AWAT1Q58HT5 328 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 TMEM196Q5HYL7 178 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 SERPINA13PQ6UXR4 307 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 DCDC5Q6ZRR9 648 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 SKAP1Q86WV1 359 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 P3H2Q8IVL5 708 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 SYTL1Q8IYJ3 562 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 CLASRPQ8N2M8 674 aaKnown RBP5.35□□□□□ -1.55
SCFD1-221ENST00000556534 C12orf76Q8N812 135 aaPredicted RBP5.35□□□□□ -1.55
SCFD1-221ENST00000556534 NGDNQ8NEJ9 315 aaKnown RBP5.35□□□□□ -1.55
SCFD1-221ENST00000556534 MUL1Q969V5 352 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 ASB2Q96Q27 587 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 FYTTD1Q96QD9 318 aaKnown RBP5.35□□□□□ -1.55
SCFD1-221ENST00000556534 NUDT22Q9BRQ3 303 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 FSCN3Q9NQT6 498 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 TFCP2L1Q9NZI6 479 aa5.35□□□□□ -1.55
SCFD1-221ENST00000556534 GXYLT2A0PJZ3 443 aa5.34□□□□□ -1.55
SCFD1-221ENST00000556534 PRRT4C9JH25 899 aa5.34□□□□□ -1.55
SCFD1-221ENST00000556534 GCATO75600 419 aa5.34□□□□□ -1.55
SCFD1-221ENST00000556534 GLP2RO95838 553 aa5.34□□□□□ -1.55
SCFD1-221ENST00000556534 RAE1P78406 368 aaKnown RBP5.34□□□□□ -1.55
SCFD1-221ENST00000556534 KCNB1Q14721 858 aa5.34□□□□□ -1.55
SCFD1-221ENST00000556534 TLDC1Q6P9B6 456 aa5.34□□□□□ -1.55
SCFD1-221ENST00000556534 PIK3AP1Q6ZUJ8 805 aa5.34□□□□□ -1.55
SCFD1-221ENST00000556534 PNISRQ8TF01 805 aaKnown RBP5.34□□□□□ -1.55
SCFD1-221ENST00000556534 CRB3Q9BUF7 120 aa5.34□□□□□ -1.55
SCFD1-221ENST00000556534 ADARB2Q9NS39 739 aaKnown RBP5.34□□□□□ -1.55
SCFD1-221ENST00000556534 RXFP3Q9NSD7 469 aa5.34□□□□□ -1.55
SCFD1-221ENST00000556534 FLRT1Q9NZU1 646 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms