RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 STRIP2Q9ULQ0 834 aa12.43□□□□□ -0.42
VRK1-204ENST00000555351 TULP3O75386 442 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 STC2O76061 302 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 IRF1P10914 325 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 CD19P15391 556 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 SLC6A11P48066 632 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 ZNF132P52740 706 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 YWHAGP61981 247 aaKnown RBP eCLIP12.42□□□□□ -0.42
VRK1-204ENST00000555351 PUM1Q14671 1186 aaKnown RBP eCLIP12.42□□□□□ -0.42
VRK1-204ENST00000555351 E2F5Q15329 346 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 CRY1Q16526 586 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 CSRP2Q16527 193 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 EOGTQ5NDL2 527 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 TMEM270Q6UE05 265 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 PRR23BQ6ZRT6 265 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 C12orf40Q86WS4 652 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 CPXM2Q8N436 756 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 FAM160A2Q8N612 972 aaPredicted RBP12.42□□□□□ -0.42
VRK1-204ENST00000555351 TERB1Q8NA31 727 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 IL17RCQ8NAC3 791 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 TSTD1Q8NFU3 115 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 SLC35F5Q8WV83 523 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 IRGQQ8WZA9 623 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 WBP2Q969T9 261 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 CNOT6LQ96LI5 555 aaKnown RBP12.42□□□□□ -0.42
VRK1-204ENST00000555351 HSFY1Q96LI6 401 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 IRX2Q9BZI1 471 aaPredicted RBP12.42□□□□□ -0.42
VRK1-204ENST00000555351 DLL3Q9NYJ7 618 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 FBXO10Q9UK96 956 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.42□□□□□ -0.42
VRK1-204ENST00000555351 PCDHB4Q9Y5E5 795 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 PCDHGA5Q9Y5G8 931 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 WDR87Q6ZQQ6 2873 aa12.42□□□□□ -0.42
VRK1-204ENST00000555351 GTPBP10A4D1E9 387 aaKnown RBP12.41□□□□□ -0.42
VRK1-204ENST00000555351 SCAMP3O14828 347 aaKnown RBP12.41□□□□□ -0.42
VRK1-204ENST00000555351 ALDH1A2O94788 518 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 LATS1O95835 1130 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 ANP32AP39687 249 aaKnown RBP12.41□□□□□ -0.42
VRK1-204ENST00000555351 STX17P56962 302 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 ZNF445P59923 1031 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 LRMPQ12912 555 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 ANO4Q32M45 955 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 C2orf27AQ580R0 203 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 CT47A1Q5JQC4 288 aaPredicted RBP12.41□□□□□ -0.42
VRK1-204ENST00000555351 GRAMD4Q6IC98 578 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 BHLHA9Q7RTU4 235 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 FAM217AQ8IXS0 508 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 SIX6OS1Q8N1H7 587 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 PLD4Q96BZ4 506 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 IPO9Q96P70 1041 aaKnown RBP12.41□□□□□ -0.42
VRK1-204ENST00000555351 HHIPQ96QV1 700 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 BBS2Q9BXC9 721 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 ULBP1Q9BZM6 244 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 CLSTN2Q9H4D0 955 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 ABCC13Q9NSE7 274 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 MARCH2Q9P0N8 246 aa12.41□□□□□ -0.42
VRK1-204ENST00000555351 HBS1LQ9Y450 684 aaKnown RBP12.41□□□□□ -0.42
VRK1-204ENST00000555351 FRYLO94915 3013 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 EML5Q05BV3 1969 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 GPR179Q6PRD1 2367 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 TBC1D3BA6NDS4 549 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 GFRA2O00451 464 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 NPC1O15118 1278 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 RHOBTB1O94844 696 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 FBXO21O94952 628 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 EPN2O95208 641 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 PENKP01210 267 aaPredicted RBP12.4□□□□□ -0.42
VRK1-204ENST00000555351 TYRP14679 529 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 RPL34P49207 117 aaKnown RBP12.4□□□□□ -0.42
VRK1-204ENST00000555351 MESP2Q0VG99 397 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 SRSF5Q13243 272 aaKnown RBP12.4□□□□□ -0.42
VRK1-204ENST00000555351 BYSLQ13895 437 aaKnown RBP12.4□□□□□ -0.42
VRK1-204ENST00000555351 TRIP4Q15650 581 aaPredicted RBP12.4□□□□□ -0.42
VRK1-204ENST00000555351 ELF2Q15723 593 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 CAMK4Q16566 473 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 USP39Q53GS9 565 aaKnown RBP12.4□□□□□ -0.42
VRK1-204ENST00000555351 RSRC2Q7L4I2 434 aaKnown RBP12.4□□□□□ -0.42
VRK1-204ENST00000555351 MIB1Q86YT6 1006 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 ALLCQ8N6M5 410 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 RBBP8NLQ8NC74 664 aaPredicted RBP12.4□□□□□ -0.42
VRK1-204ENST00000555351 OLIG1Q8TAK6 271 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 STK32AQ8WU08 396 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 TFAP2BQ92481 460 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 RMDN1Q96DB5 314 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 SLC2A11Q9BYW1 496 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 INTS2Q9H0H0 1204 aaKnown RBP12.4□□□□□ -0.42
VRK1-204ENST00000555351 POLMQ9NP87 494 aaPredicted RBP12.4□□□□□ -0.42
VRK1-204ENST00000555351 PARD6AQ9NPB6 346 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 DNAJC17Q9NVM6 304 aaKnown RBP12.4□□□□□ -0.42
VRK1-204ENST00000555351 DACH1Q9UI36 760 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 RASAL2Q9UJF2 1139 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 USP18Q9UMW8 372 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 SLC27A6Q9Y2P4 619 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 SPTBN4Q9H254 2564 aa12.4□□□□□ -0.42
VRK1-204ENST00000555351 NEDD8-MDP1E9PL57 170 aa12.39□□□□□ -0.43
VRK1-204ENST00000555351 RNF225M0QZC1 329 aaPredicted RBP12.39□□□□□ -0.43
VRK1-204ENST00000555351 TULP2O00295 520 aa12.39□□□□□ -0.43
VRK1-204ENST00000555351 MDM4O15151 490 aa12.39□□□□□ -0.43
VRK1-204ENST00000555351 SART1O43290 800 aaKnown RBP12.39□□□□□ -0.43
VRK1-204ENST00000555351 KLF8O95600 359 aaPredicted RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms