RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 NRP1O14786 923 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 GAS2O43903 313 aaKnown RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 NEBLO76041 1014 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 SUN1O94901 812 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 PAEPP09466 180 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 DESP17661 470 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 GBP1P32455 592 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 ARL4AP40617 200 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 CLCNKBP51801 687 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 TFDP2Q14188 446 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 RCN2Q14257 317 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 FSCN1Q16658 493 aaKnown RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 CST9Q5W186 159 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 HEATR6Q6AI08 1181 aaKnown RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 EXOC8Q8IYI6 725 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 ATP11CQ8NB49 1132 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 SLC35B2Q8TB61 432 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 MAML1Q92585 1016 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 FAM136AQ96C01 138 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 PGBD4Q96DM1 585 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 SENP8Q96LD8 212 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 ZNF317Q96PQ6 595 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 KCTD15Q96SI1 283 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 TMEM209Q96SK2 561 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 BCO2Q9BYV7 579 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 PCDH9Q9HC56 1237 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 SMYD2Q9NRG4 433 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 DDIT4Q9NX09 232 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 KLHL8Q9P2G9 620 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 PHTF1Q9UMS5 762 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 UBQLN1Q9UMX0 589 aaKnown RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 PCDHGC3Q9UN70 934 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 GABRQQ9UN88 632 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 TCRBV5S1A1TA0A578 114 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 NT5C1B-RDH14C9J2C7 533 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 FAM72CH0Y354 149 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 APOC4-APOC2K7ER74 178 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 STRNO43815 780 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 LPXNO60711 386 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 SOAT2O75908 522 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 APOC2P02655 101 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 SLC4A1P02730 911 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 ATP5DP30049 168 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 CACNA2D1P54289 1103 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 SLC8A3P57103 927 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 DEUP1Q05D60 604 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 MAP2K5Q13163 448 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 PPP1R15BQ5SWA1 713 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 FAM72AQ5TYM5 149 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 FAM72DQ6L9T8 149 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 LCLAT1Q6UWP7 414 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 FAM72BQ86X60 149 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 PQLC3Q8N755 202 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 MCRS1Q96EZ8 462 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 VPS11Q9H270 941 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 AGO3Q9H9G7 860 aaKnown RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 KLC4Q9NSK0 619 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 ARMCX1Q9P291 453 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 WDR35Q9P2L0 1181 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 ITGA11Q9UKX5 1188 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 GRID1Q9ULK0 1009 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 CNTN6Q9UQ52 1028 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 USP15Q9Y4E8 981 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 TCRBV9S1A1TA0A576 114 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 TTC24A2A3L6 582 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 C3orf70A6NLC5 250 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 YJEFN3A6XGL0 299 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 E7ENQ6 273 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 DFFAO00273 331 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 MDM4O15151 490 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 SNX3O60493 162 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 ATP2A2P16615 1042 aaKnown RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 TAC1P20366 129 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 PHBP35232 272 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 GRM5P41594 1212 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 LILRA4P59901 499 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 PDE1BQ01064 536 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 ITKQ08881 620 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 MORF4L2Q15014 288 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 IQSEC1Q6DN90 963 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 FAM117BQ6P1L5 589 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 GPRIN1Q7Z2K8 1008 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 TRABD2AQ86V40 505 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 FITM2Q8N6M3 262 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 SCAMP5Q8TAC9 235 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 SERAC1Q96JX3 654 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 WDR83Q9BRX9 315 aaKnown RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 ROPN1BQ9BZX4 212 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 TSPYL2Q9H2G4 693 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 ADAMTS10Q9H324 1103 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 NRDE2Q9H7Z3 1164 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 ROPN1Q9HAT0 212 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 CYP3A43Q9HB55 503 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 ZNF358Q9NW07 568 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.8□□□□□ -1.48
LIMA1-215ENST00000552823 FIS1Q9Y3D6 152 aa5.8□□□□□ -1.48
LIMA1-215ENST00000552823 DCAF8L1A6NGE4 600 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 A6NNZ2 444 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 C9IYK1 514 aa5.79□□□□□ -1.48
LIMA1-215ENST00000552823 BHMG1C9JSJ3 638 aaPredicted RBP5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms