RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 MCCD1P59942 119 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 SLC25A11Q02978 314 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 SLC10A2Q12908 348 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 TMED1Q13445 227 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 CUL2Q13617 745 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 ZACNQ401N2 412 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 C1QTNF12Q5T7M4 302 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 LIN9Q5TKA1 542 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 FAM219BQ5XKK7 198 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 SNRNP48Q6IEG0 339 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 FAM160B2Q86V87 743 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 CDR2LQ86X02 465 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 LILRA2Q8N149 483 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 PDIK1LQ8N165 341 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 NDUFAF2Q8N183 169 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 CEP70Q8NHQ1 597 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 ADAM32Q8TC27 787 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 DGCR14Q96DF8 476 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 DTNBP1Q96EV8 351 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 PRPF18Q99633 342 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 IDI2Q9BXS1 227 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 TUT1Q9H6E5 874 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 GPAMQ9HCL2 828 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 RNF146Q9NTX7 359 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 ARHGEF38Q9NXL2 777 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 IP6K2Q9UHH9 426 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 EMCNQ9ULC0 261 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 AGTPBP1Q9UPW5 1226 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 DNAJC16Q9Y2G8 782 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 TMX2Q9Y320 296 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 CNTNAP2Q9UHC6 1331 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 WDR64B1ANS9 1081 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 KLF11O14901 512 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 ATP9BO43861 1147 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 TOM1L1O75674 476 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 CLPTM1O96005 669 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 SERPINA6P08185 405 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 TFPTP0C1Z6 253 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 AOC1P19801 751 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 VARSP26640 1264 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 FDFT1P37268 417 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 HMGCS2P54868 508 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 YWHAZP63104 245 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 CRADDP78560 199 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 EML3Q32P44 896 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 TKFCQ3LXA3 575 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 ANKDD1AQ495B1 522 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 SH3D19Q5HYK7 790 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 PPM1LQ5SGD2 360 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 KLHL35Q6PF15 583 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 SAMD7Q7Z3H4 446 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 AMIGO2Q86SJ2 522 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 SDCCAG8Q86SQ7 713 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 KBTBD6Q86V97 674 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 CAND1Q86VP6 1230 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 RBM12BQ8IXT5 1001 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 ARHGAP24Q8N264 748 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 PIP4K2CQ8TBX8 421 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 AGR3Q8TD06 166 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 TMC2Q8TDI7 906 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 RSAD2Q8WXG1 361 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 ALKBH8Q96BT7 664 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 CLMNQ96JQ2 1002 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 PPP1R36Q96LQ0 422 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 OLFM3Q96PB7 478 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 MAGEB5Q9BZ81 275 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 WWP1Q9H0M0 922 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 MRPL47Q9HD33 250 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 TBC1D22BQ9NU19 505 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 ZNF358Q9NW07 568 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 NXF1Q9UBU9 619 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 FETUBQ9UGM5 382 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 FEM1BQ9UK73 627 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 SF3B1O75533 1304 aaKnown RBP eCLIP5.03□□□□□ -1.63e-6■■■■■ 137.9
LIMA1-214ENST00000552783 IQANK1A0A1B0GTG1 560 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 STX16-NPEPL1H3BU86 382 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 I3L4J1 428 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 CCNT2O60583 730 aaKnown RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 FBXO21O94952 628 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 CRTAMO95727 393 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 PRKCGP05129 697 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 SRGAP2CP0DJJ0 459 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 RBP3P10745 1247 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 ALDH1A3P47895 512 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 PGGT1BP53609 377 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 DNAL1Q4LDG9 190 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 PPM1JQ5JR12 505 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 ACBD5Q5T8D3 534 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-214ENST00000552783 TEDDM1Q5T9Z0 273 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 C1orf228Q6PIY5 440 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 SPNS2Q8IVW8 549 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 GPD1LQ8N335 351 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 NME8Q8N427 588 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 GALNT4Q8N4A0 578 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 TTC13Q8NBP0 860 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 FLAD1Q8NFF5 587 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 SPATA18Q8TC71 538 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 FAM151AQ8WW52 585 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 HSPH1Q92598 858 aa5.02□□□□□ -1.61
LIMA1-214ENST00000552783 PGBD4Q96DM1 585 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms