RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 RAB6BQ9NRW1 208 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 SLC17A6Q9P2U8 582 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 NXF1Q9UBU9 619 aaKnown RBP5.63□□□□□ -1.51
LIMA1-212ENST00000552491 USP18Q9UMW8 372 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 IKBKGQ9Y6K9 419 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 TRIP11Q15643 1979 aa5.63□□□□□ -1.51
LIMA1-212ENST00000552491 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 KLHL33A6NCF5 533 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 SPATA31C2B4DYI2 1134 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 WNT10BO00744 389 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ITM2AO43736 263 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 MSCO60682 206 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 SNNO75324 88 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 LYPLA1O75608 230 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ENDOD1O94919 500 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 BAG2O95816 211 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 SNRPAP09012 282 aaKnown RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 HOXC6P09630 235 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 IL4RP24394 825 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ARRB2P32121 409 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 GMPRP36959 345 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 CCNFP41002 786 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 GRIA1P42261 906 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 IRX4P78413 519 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 TFAMQ00059 246 aaKnown RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 SLC25A3Q00325 362 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ROR1Q01973 937 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 GSTA3Q16772 222 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 LRRC36Q1X8D7 754 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 C15orf59Q2T9L4 293 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ANGEL2Q5VTE6 544 aaKnown RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 XRRA1Q6P2D8 792 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ZNF534Q76KX8 674 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 NET1Q7Z628 596 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 FAM83AQ86UY5 434 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 WDR49Q8IV35 697 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 SMC1BQ8NDV3 1235 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 RNF217Q8TC41 542 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 FNIP1Q8TF40 1166 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 PYDC1Q8WXC3 89 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 USP6NLQ92738 828 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ZNF668Q96K58 619 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 TEPSINQ96N21 525 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 PCYT2Q99447 389 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 EBF3Q9H4W6 596 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 PNPLA8Q9NP80 782 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ZNF277Q9NRM2 450 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 GPATCH2LQ9NWQ4 482 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ETAA1Q9NY74 926 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 TAGLN3Q9UI15 199 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 HBS1LQ9Y450 684 aaKnown RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 MAFBQ9Y5Q3 323 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 SLC15A5A6NIM6 579 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 SDR42E2A6NKP2 422 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 SPECC1L-ADORA2AF8WAN1 911 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 CHADO15335 359 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ADCY3O60266 1144 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 PEX10O60683 326 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 SPAG6O75602 509 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 RNF8O76064 485 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 RTN3O95197 1032 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 OATP04181 439 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 SPATA31D3P0C874 917 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 CD1EP15812 388 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 PRKCHP24723 683 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 RBL1P28749 1068 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ADORA2AP29274 412 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 CRABP2P29373 138 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 GRIA2P42262 883 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 CDH6P55285 790 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 OSTNP61366 133 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 MSLNQ13421 630 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 HADHQ16836 314 aaKnown RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ZNF699Q32M78 642 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 TRMT5Q32P41 509 aaKnown RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 SFT2D3Q587I9 215 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 RALGPS1Q5JS13 557 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 MROH9Q5TGP6 573 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 FKBP1CQ5VVH2 108 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 SNRNP48Q6IEG0 339 aaKnown RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 C16orf46Q6P387 395 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 UNC5AQ6ZN44 842 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 SPATA31D4Q6ZUB0 917 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 MAVSQ7Z434 540 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 NUDCD3Q8IVD9 361 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 TMEM192Q8IY95 271 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 CCDC33Q8N5R6 958 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 PQLC3Q8N755 202 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 POU5F2Q8N7G0 328 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 NR1H4Q96RI1 486 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 TCHPQ9BT92 498 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ZNF302Q9NR11 478 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 STAU2Q9NUL3 570 aaKnown RBP eCLIP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 STK32BQ9NY57 414 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 CPSF2Q9P2I0 782 aaKnown RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 PDP2Q9P2J9 529 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ZC3H7BQ9UGR2 993 aaKnown RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 TSR3Q9UJK0 312 aaKnown RBP5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ANGPTL2Q9UKU9 493 aa5.62□□□□□ -1.51
LIMA1-212ENST00000552491 ZNF214Q9UL59 606 aaPredicted RBP5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms