RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 SPPL3Q8TCT6 385 aa5.64□□□□□ -1.51
LIMA1-205ENST00000550592 CTHRC1Q96CG8 243 aa5.64□□□□□ -1.51
LIMA1-205ENST00000550592 R3HDM4Q96D70 268 aa5.64□□□□□ -1.51
LIMA1-205ENST00000550592 PBKQ96KB5 322 aa5.64□□□□□ -1.51
LIMA1-205ENST00000550592 COQ10AQ96MF6 247 aa5.64□□□□□ -1.51
LIMA1-205ENST00000550592 SAYSD1Q9NPB0 183 aa5.64□□□□□ -1.51
LIMA1-205ENST00000550592 RXFP3Q9NSD7 469 aa5.64□□□□□ -1.51
LIMA1-205ENST00000550592 KIF17Q9P2E2 1029 aa5.64□□□□□ -1.51
LIMA1-205ENST00000550592 PGAP2Q9UHJ9 254 aa5.64□□□□□ -1.51
LIMA1-205ENST00000550592 REXO2Q9Y3B8 237 aaKnown RBP5.64□□□□□ -1.51
LIMA1-205ENST00000550592 POGZQ7Z3K3 1410 aa5.64□□□□□ -1.51
LIMA1-205ENST00000550592 COL4A3Q01955 1670 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 STRCQ7RTU9 1775 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 FAM90A18PA6NE21 464 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 FAM90A16PA6NEW6 464 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 FAM90A9PA6NNJ1 464 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 A8MVJ9 347 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 FAM90A5PA8MXJ8 464 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 PMPCBO75439 489 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 WDR47O94967 919 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 PRKCBP05771 671 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 CHRM2P08172 466 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 FAM90A15PP0C7V4 464 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 FAM90A14PP0C7W9 464 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 HKR1P10072 659 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 ZFXP17010 805 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-205ENST00000550592 TGM1P22735 817 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 GKP32189 559 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 PBX1P40424 430 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 CLCN2P51788 898 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 CSHL1Q14406 222 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 ST3GAL2Q16842 350 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 TXNRD1Q16881 649 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 Q6ZNX1 250 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 USP51Q70EK9 711 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 PRRT2Q7Z6L0 340 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-205ENST00000550592 LINC00476Q8WZB0 136 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 WDYHV1Q96HA8 205 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 PAAF1Q9BRP4 392 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 SYBUQ9NX95 663 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.63□□□□□ -1.51
LIMA1-205ENST00000550592 TNIKQ9UKE5 1360 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 UHRF1BP1LA0JNW5 1464 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 ARAP3Q8WWN8 1544 aa5.63□□□□□ -1.51
LIMA1-205ENST00000550592 TJP3O95049 919 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 TMEM225BP0DP42 221 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 ADD2P35612 726 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 CDK7P50613 346 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 EIF4A1P60842 406 aaKnown RBP5.62□□□□□ -1.51
LIMA1-205ENST00000550592 POU5F1BQ06416 359 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 KCNJ12Q14500 433 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 CYP1B1Q16678 543 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 AASDHQ4L235 1098 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-205ENST00000550592 ALFQ53S48 1182 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 TMEM196Q5HYL7 178 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 FBXO47Q5MNV8 452 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 FAM90A2PQ658T7 463 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 KAZNQ674X7 775 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 MSANTD2Q6P1R3 559 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 NFRKBQ6P4R8 1299 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 PIK3AP1Q6ZUJ8 805 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 RAB11FIP2Q7L804 512 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 CLASRPQ8N2M8 674 aaKnown RBP5.62□□□□□ -1.51
LIMA1-205ENST00000550592 LCORLQ8N3X6 602 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 RP9Q8TA86 221 aaKnown RBP5.62□□□□□ -1.51
LIMA1-205ENST00000550592 XAGE5Q8WWM1 108 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 OVCA2Q8WZ82 227 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 TFAP2BQ92481 460 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 RUBCNQ92622 972 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 SDCCAG3Q96C92 435 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 UBXN10Q96LJ8 280 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 ZSCAN31Q96LW9 406 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-205ENST00000550592 TTPALQ9BTX7 342 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 DPCDQ9BVM2 203 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-205ENST00000550592 VPS16Q9H269 839 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 SERTAD4Q9NUC0 356 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 NFU1Q9UMS0 254 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 DAPP1Q9UN19 280 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 UACAQ9BZF9 1416 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 CUL7Q14999 1698 aa5.62□□□□□ -1.51
LIMA1-205ENST00000550592 HMX3A6NHT5 357 aa5.61□□□□□ -1.51
LIMA1-205ENST00000550592 B9A039 149 aa5.61□□□□□ -1.51
LIMA1-205ENST00000550592 CTIFO43310 598 aaKnown RBP5.61□□□□□ -1.51
LIMA1-205ENST00000550592 SPRY2O43597 315 aa5.61□□□□□ -1.51
LIMA1-205ENST00000550592 DLDP09622 509 aaKnown RBP5.61□□□□□ -1.51
LIMA1-205ENST00000550592 MAKP20794 623 aa5.61□□□□□ -1.51
LIMA1-205ENST00000550592 PCSK6P29122 969 aa5.61□□□□□ -1.51
LIMA1-205ENST00000550592 MPLP40238 635 aa5.61□□□□□ -1.51
LIMA1-205ENST00000550592 DGKQP52824 942 aa5.61□□□□□ -1.51
LIMA1-205ENST00000550592 EFR3AQ14156 821 aa5.61□□□□□ -1.51
LIMA1-205ENST00000550592 PLAC9Q5JTB6 97 aa5.61□□□□□ -1.51
LIMA1-205ENST00000550592 MTHFD1LQ6UB35 978 aa5.61□□□□□ -1.51
LIMA1-205ENST00000550592 PARS2Q7L3T8 475 aaKnown RBP5.61□□□□□ -1.51
LIMA1-205ENST00000550592 ZNF551Q7Z340 670 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-205ENST00000550592 TRABD2AQ86V40 505 aa5.61□□□□□ -1.51
LIMA1-205ENST00000550592 OR6Y1Q8NGX8 325 aa5.61□□□□□ -1.51
LIMA1-205ENST00000550592 THAP4Q8WY91 577 aa5.61□□□□□ -1.51
LIMA1-205ENST00000550592 PRR25Q96S07 402 aa5.61□□□□□ -1.51
LIMA1-205ENST00000550592 MMRN2Q9H8L6 949 aa5.61□□□□□ -1.51
LIMA1-205ENST00000550592 ARHGEF3Q9NR81 526 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms