RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 TAF5Q15542 800 aa15.5■□□□□ 0.07
CUX1-214ENST00000550008 RNF180Q86T96 592 aa15.5■□□□□ 0.07
CUX1-214ENST00000550008 EXOC3L1Q86VI1 746 aa15.5■□□□□ 0.07
CUX1-214ENST00000550008 BLOC1S5Q8TDH9 187 aa15.5■□□□□ 0.07
CUX1-214ENST00000550008 SYT17Q9BSW7 474 aa15.5■□□□□ 0.07
CUX1-214ENST00000550008 SLCO1B3Q9NPD5 702 aa15.5■□□□□ 0.07
CUX1-214ENST00000550008 MYH14Q7Z406 1995 aaKnown RBP15.5■□□□□ 0.07
CUX1-214ENST00000550008 CD48P09326 243 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 TWF1Q12792 350 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 SLC39A4Q6P5W5 647 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 PRPF39Q86UA1 669 aaKnown RBP15.49■□□□□ 0.07
CUX1-214ENST00000550008 MT-CO1P00395 513 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 RPA3P35244 121 aaPredicted RBP15.49■□□□□ 0.07
CUX1-214ENST00000550008 ZNF410Q86VK4 478 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 HTR3CQ8WXA8 447 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 TMEM237Q96Q45 408 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 ADAM2Q99965 735 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 ELOVL4Q9GZR5 314 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 TSPYL2Q9H2G4 693 aaPredicted RBP15.49■□□□□ 0.07
CUX1-214ENST00000550008 NDFIP2Q9NV92 336 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 RBPJLQ9UBG7 517 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 SNX2O60749 519 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 C16orf46Q6P387 395 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 STRA8Q7Z7C7 330 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 DCP1BQ8IZD4 617 aaKnown RBP15.49■□□□□ 0.07
CUX1-214ENST00000550008 ART4Q93070 314 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 LGMNQ99538 433 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 GPBP1L1Q9HC44 474 aaPredicted RBP15.49■□□□□ 0.07
CUX1-214ENST00000550008 CYP4F12Q9HCS2 524 aa15.49■□□□□ 0.07
CUX1-214ENST00000550008 SMAPO00193 183 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 PRRG1O14668 218 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 HSP90AA5PQ58FG0 334 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 FRA10AC1Q70Z53 315 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 TEPSINQ96N21 525 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 XPNPEP3Q9NQH7 507 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 ANGPTL2Q9UKU9 493 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 KCNH4Q9UQ05 1017 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 GOLGA8QA0A0J9YX86 632 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 GOLGA8OA6NCC3 632 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 GOLGA8NF8WBI6 632 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 ZNF143P52747 638 aaPredicted RBP15.48■□□□□ 0.07
CUX1-214ENST00000550008 FASTKD3Q14CZ7 662 aaKnown RBP15.48■□□□□ 0.07
CUX1-214ENST00000550008 NAPEPLDQ6IQ20 393 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 FBXO32Q969P5 355 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 TMA16Q96EY4 203 aaKnown RBP15.48■□□□□ 0.07
CUX1-214ENST00000550008 NTPCRQ9BSD7 190 aaKnown RBP15.48■□□□□ 0.07
CUX1-214ENST00000550008 CATSPERBQ9H7T0 1116 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 ZC3H4Q9UPT8 1303 aaKnown RBP15.48■□□□□ 0.07
CUX1-214ENST00000550008 LAMB4A4D0S4 1761 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 TSPAN3O60637 253 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 SKAP2O75563 359 aaPredicted RBP15.48■□□□□ 0.07
CUX1-214ENST00000550008 VNN1O95497 513 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 AKR1A1P14550 325 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 KCNA4P22459 653 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 RABGGTBP53611 331 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 VEPH1Q14D04 833 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 CTXN3Q4LDR2 81 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 LAYNQ6UX15 382 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 ASIC4Q96FT7 647 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 LPIN3Q9BQK8 851 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 TRIM62Q9BVG3 475 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 SPATS2LQ9NUQ6 558 aaKnown RBP15.48■□□□□ 0.07
CUX1-214ENST00000550008 SLC24A2Q9UI40 661 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 CDY2AQ9Y6F7 541 aa15.48■□□□□ 0.07
CUX1-214ENST00000550008 LUC7L3O95232 432 aaKnown RBP15.47■□□□□ 0.07
CUX1-214ENST00000550008 NRLP54845 237 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 MON1BQ7L1V2 547 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 SERPINI1Q99574 410 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 EGFL8Q99944 293 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 EIF2AQ9BY44 585 aaKnown RBP15.47■□□□□ 0.07
CUX1-214ENST00000550008 NIFKQ9BYG3 293 aaKnown RBP15.47■□□□□ 0.07
CUX1-214ENST00000550008 MINDY3Q9H8M7 445 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 PPCSQ9HAB8 311 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 NOD2Q9HC29 1040 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 NOL3O60936 208 aaKnown RBP15.47■□□□□ 0.07
CUX1-214ENST00000550008 LRCH4O75427 683 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 CBX6O95503 412 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 TRUB2O95900 331 aaKnown RBP15.47■□□□□ 0.07
CUX1-214ENST00000550008 GOT1P17174 413 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 PTPN1P18031 435 aaKnown RBP15.47■□□□□ 0.07
CUX1-214ENST00000550008 FDFT1P37268 417 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 DRG2P55039 364 aaKnown RBP15.47■□□□□ 0.07
CUX1-214ENST00000550008 AQP5P55064 265 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 QPCTQ16769 361 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 EML3Q32P44 896 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 MUC3BQ9H195 1237 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 C12orf65Q9H3J6 166 aaKnown RBP15.47■□□□□ 0.07
CUX1-214ENST00000550008 ARMCX1Q9P291 453 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 NRCAMQ92823 1304 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 MYH8P13535 1937 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 TREHO43280 583 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 CHEK2O96017 543 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 TCF4P15884 667 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 CREB1P16220 341 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 PDCD2Q16342 344 aaPredicted RBP15.47■□□□□ 0.07
CUX1-214ENST00000550008 DCAF12L1Q5VU92 463 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 PLEKHA7Q6IQ23 1121 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 ALLCQ8N6M5 410 aa15.47■□□□□ 0.07
CUX1-214ENST00000550008 DDX27Q96GQ7 796 aaKnown RBP15.47■□□□□ 0.07
CUX1-214ENST00000550008 RBM22Q9NW64 420 aaKnown RBP eCLIP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms