RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 TRIM62Q9BVG3 475 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 PRAMEF12O95522 483 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 LAMP2P13473 410 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 ATP5C1P36542 298 aaKnown RBP22.16■■□□□ 1.14
VPS29-206ENST00000549578 AVPR1AP37288 418 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 MAMLD1Q13495 774 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 FAM78AQ5JUQ0 283 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 PLEKHA7Q6IQ23 1121 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 BEND5Q7L4P6 421 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 TADA2BQ86TJ2 420 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 MIB1Q86YT6 1006 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 ARID3BQ8IVW6 561 aaPredicted RBP22.16■■□□□ 1.14
VPS29-206ENST00000549578 ZNF276Q8N554 614 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 ACRBPQ8NEB7 543 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 ACSF2Q96CM8 615 aaPredicted RBP22.16■■□□□ 1.14
VPS29-206ENST00000549578 MCEEQ96PE7 176 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 DESI2Q9BSY9 194 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 PARVAQ9NVD7 372 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 SMPD4Q9NXE4 827 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 ZMYM5Q9UJ78 669 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 RASAL2Q9UJF2 1139 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 USTQ9Y2C2 406 aa22.16■■□□□ 1.14
VPS29-206ENST00000549578 REXO2Q9Y3B8 237 aaKnown RBP22.16■■□□□ 1.14
VPS29-206ENST00000549578 SIGLEC16A6NMB1 481 aa22.15■■□□□ 1.14
VPS29-206ENST00000549578 SOBPA7XYQ1 873 aa22.15■■□□□ 1.14
VPS29-206ENST00000549578 C2CD4DB7Z1M9 353 aa22.15■■□□□ 1.14
VPS29-206ENST00000549578 MBL2P11226 248 aaPredicted RBP22.15■■□□□ 1.14
VPS29-206ENST00000549578 PFKLP17858 780 aa22.15■■□□□ 1.14
VPS29-206ENST00000549578 RFC1P35251 1148 aaPredicted RBP22.15■■□□□ 1.14
VPS29-206ENST00000549578 MAGEA1P43355 309 aa22.15■■□□□ 1.14
VPS29-206ENST00000549578 RPL7AP62424 266 aaKnown RBP22.15■■□□□ 1.14
VPS29-206ENST00000549578 GPC5P78333 572 aa22.15■■□□□ 1.14
VPS29-206ENST00000549578 PITX1P78337 314 aaPredicted RBP22.15■■□□□ 1.14
VPS29-206ENST00000549578 PPP1R15BQ5SWA1 713 aa22.15■■□□□ 1.14
VPS29-206ENST00000549578 TDRD5Q8NAT2 981 aaKnown RBP22.15■■□□□ 1.14
VPS29-206ENST00000549578 CTNNBL1Q8WYA6 563 aaPredicted RBP22.15■■□□□ 1.14
VPS29-206ENST00000549578 ASB16Q96NS5 453 aa22.15■■□□□ 1.14
VPS29-206ENST00000549578 CDK5RAP1Q96SZ6 601 aaKnown RBP22.15■■□□□ 1.14
VPS29-206ENST00000549578 OLA1Q9NTK5 396 aaKnown RBP22.15■■□□□ 1.14
VPS29-206ENST00000549578 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.15■■□□□ 1.14
VPS29-206ENST00000549578 SFMBT1Q9UHJ3 866 aa22.15■■□□□ 1.14
VPS29-206ENST00000549578 DNMT3LQ9UJW3 386 aa22.15■■□□□ 1.14
VPS29-206ENST00000549578 PCDHA13Q9Y5I0 950 aa22.15■■□□□ 1.14
VPS29-206ENST00000549578 ARHGAP6O43182 974 aa22.14■■□□□ 1.13
VPS29-206ENST00000549578 IPO7O95373 1038 aaKnown RBP22.14■■□□□ 1.13
VPS29-206ENST00000549578 MATKP42679 507 aa22.14■■□□□ 1.13
VPS29-206ENST00000549578 C10orf76Q5T2E6 689 aa22.14■■□□□ 1.13
VPS29-206ENST00000549578 MSANTD2Q6P1R3 559 aa22.14■■□□□ 1.13
VPS29-206ENST00000549578 KLHDC10Q6PID8 442 aa22.14■■□□□ 1.13
VPS29-206ENST00000549578 ADAM32Q8TC27 787 aa22.14■■□□□ 1.13
VPS29-206ENST00000549578 DQX1Q8TE96 717 aaKnown RBP22.14■■□□□ 1.13
VPS29-206ENST00000549578 ATXN2LQ8WWM7 1075 aaKnown RBP22.14■■□□□ 1.13
VPS29-206ENST00000549578 SMARCD2Q92925 531 aa22.14■■□□□ 1.13
VPS29-206ENST00000549578 ZNF830Q96NB3 372 aaPredicted RBP22.14■■□□□ 1.13
VPS29-206ENST00000549578 MARCH2Q9P0N8 246 aa22.14■■□□□ 1.13
VPS29-206ENST00000549578 TFR2Q9UP52 801 aa22.14■■□□□ 1.13
VPS29-206ENST00000549578 CCL26Q9Y258 94 aa22.14■■□□□ 1.13
VPS29-206ENST00000549578 CPQQ9Y646 472 aa22.14■■□□□ 1.13
VPS29-206ENST00000549578 ZFP37Q9Y6Q3 630 aaPredicted RBP22.14■■□□□ 1.13
VPS29-206ENST00000549578 NUP210Q8TEM1 1887 aaPredicted RBP22.13■■□□□ 1.13
VPS29-206ENST00000549578 MSI1O43347 362 aaKnown RBP22.13■■□□□ 1.13
VPS29-206ENST00000549578 CYP1A2P05177 515 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 TMEM253P0C7T8 217 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 NOS2P35228 1153 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 SLC7A9P82251 487 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 ZXDBP98169 803 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 DCUN1D2Q6PH85 259 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 ARCQ7LC44 396 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 TAC4Q86UU9 113 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 TTC16Q8NEE8 873 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 RXFP2Q8WXD0 754 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 USP13Q92995 863 aaPredicted RBP22.13■■□□□ 1.13
VPS29-206ENST00000549578 TRIM7Q9C029 511 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 KCNF1Q9H3M0 494 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 TDP1Q9NUW8 608 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 EPS15L1Q9UBC2 864 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 NR2E1Q9Y466 385 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 SCINQ9Y6U3 715 aa22.13■■□□□ 1.13
VPS29-206ENST00000549578 C2CD4BA6NLJ0 364 aa22.12■■□□□ 1.13
VPS29-206ENST00000549578 NRDCO43847 1150 aa22.12■■□□□ 1.13
VPS29-206ENST00000549578 TFE3P19532 575 aaPredicted RBP22.12■■□□□ 1.13
VPS29-206ENST00000549578 VIPR2P41587 438 aa22.12■■□□□ 1.13
VPS29-206ENST00000549578 ZFRQ96KR1 1074 aaKnown RBP22.12■■□□□ 1.13
VPS29-206ENST00000549578 CFAP57Q96MR6 1250 aa22.12■■□□□ 1.13
VPS29-206ENST00000549578 DDX23Q9BUQ8 820 aaKnown RBP22.12■■□□□ 1.13
VPS29-206ENST00000549578 NUP85Q9BW27 656 aa22.12■■□□□ 1.13
VPS29-206ENST00000549578 ADAM33Q9BZ11 813 aa22.12■■□□□ 1.13
VPS29-206ENST00000549578 SMOC2Q9H3U7 446 aa22.12■■□□□ 1.13
VPS29-206ENST00000549578 MRPL47Q9HD33 250 aaKnown RBP22.12■■□□□ 1.13
VPS29-206ENST00000549578 GKN1Q9NS71 199 aa22.12■■□□□ 1.13
VPS29-206ENST00000549578 ARHGAP26Q9UNA1 814 aa22.12■■□□□ 1.13
VPS29-206ENST00000549578 HELZP42694 1942 aaKnown RBP22.12■■□□□ 1.13
VPS29-206ENST00000549578 SLC12A8A0AV02 714 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 PDGFRAP16234 1089 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 FCARP24071 287 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 RIN3Q8TB24 985 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 RSPRY1Q96DX4 576 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 ASB2Q96Q27 587 aa22.11■■□□□ 1.13
VPS29-206ENST00000549578 KLF16Q9BXK1 252 aaPredicted RBP22.11■■□□□ 1.13
VPS29-206ENST00000549578 LUC7LQ9NQ29 371 aaKnown RBP22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms