RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 RNF43Q68DV7 783 aa18.31■□□□□ 0.52
CHMP1A-205ENST00000548650 GRAMD4Q6IC98 578 aa18.31■□□□□ 0.52
CHMP1A-205ENST00000548650 CYP2U1Q7Z449 544 aa18.31■□□□□ 0.52
CHMP1A-205ENST00000548650 TRMT11Q7Z4G4 463 aaKnown RBP18.31■□□□□ 0.52
CHMP1A-205ENST00000548650 ZC3H3Q8IXZ2 948 aaKnown RBP18.31■□□□□ 0.52
CHMP1A-205ENST00000548650 SLC4A11Q8NBS3 891 aa18.31■□□□□ 0.52
CHMP1A-205ENST00000548650 CCDC34Q96HJ3 373 aa18.31■□□□□ 0.52
CHMP1A-205ENST00000548650 SPACA7Q96KW9 195 aa18.31■□□□□ 0.52
CHMP1A-205ENST00000548650 BBS2Q9BXC9 721 aa18.31■□□□□ 0.52
CHMP1A-205ENST00000548650 RAB20Q9NX57 234 aa18.31■□□□□ 0.52
CHMP1A-205ENST00000548650 CLIC5Q9NZA1 410 aa18.31■□□□□ 0.52
CHMP1A-205ENST00000548650 BCCIPQ9P287 314 aaKnown RBP eCLIP18.31■□□□□ 0.52
CHMP1A-205ENST00000548650 DNMT3LQ9UJW3 386 aa18.31■□□□□ 0.52
CHMP1A-205ENST00000548650 NAGPAQ9UK23 515 aa18.31■□□□□ 0.52
CHMP1A-205ENST00000548650 PI4KAP42356 2102 aa18.31■□□□□ 0.52
CHMP1A-205ENST00000548650 CETN3O15182 167 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 SLC16A3O15427 465 aaKnown RBP18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 STX10O60499 249 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 STC2O76061 302 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 PRCPP42785 496 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 PSEN1P49768 467 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 RAD23BP54727 409 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 CBWD6Q4V339 395 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 COBLL1Q53SF7 1204 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 CBWD3Q5JTY5 395 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 CBWD5Q5RIA9 395 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 EGFLAMQ63HQ2 1017 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 TPGS1Q6ZTW0 290 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 ZNF276Q8N554 614 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 TTC39CQ8N584 583 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 FRMD1Q8N878 549 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 P2RY11Q96G91 374 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 DNAI2Q9GZS0 605 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 FAM124BQ9H5Z6 455 aaPredicted RBP18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 CD248Q9HCU0 757 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 RMND1Q9NWS8 449 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 MBD1Q9UIS9 605 aaPredicted RBP18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 STARD13Q9Y3M8 1113 aa18.3■□□□□ 0.52
CHMP1A-205ENST00000548650 GON4LQ3T8J9 2241 aa18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 A0A1W2PQF6 199 aa18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 PATE3B3GLJ2 98 aa18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 HOXB2P14652 356 aa18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 GABRG2P18507 467 aa18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 PLA2G4AP47712 749 aa18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 DHPSP49366 369 aaPredicted RBP18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 PMS1P54277 932 aaKnown RBP18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 DCAF17Q5H9S7 520 aaPredicted RBP18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 ZNF658Q5TYW1 1059 aaPredicted RBP18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 ARHGAP17Q68EM7 881 aa18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 TOGARAM2Q6ZUX3 1019 aa18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 ENGASEQ8NFI3 743 aa18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 TMEM176AQ96HP8 235 aa18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 HEXIM2Q96MH2 286 aaKnown RBP18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 XPO6Q96QU8 1125 aaKnown RBP18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 LSM14BQ9BX40 385 aaKnown RBP18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 WDR35Q9P2L0 1181 aa18.29■□□□□ 0.52
CHMP1A-205ENST00000548650 USP24Q9UPU5 2620 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 PRRT4C9JH25 899 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 KLKB1P03952 638 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 PTGER3P43115 390 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 RAB41Q5JT25 222 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 NUDT18Q6ZVK8 323 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 ARMCX6Q7L4S7 300 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 LPCAT2Q7L5N7 544 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 TADA2BQ86TJ2 420 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 PIGZQ86VD9 579 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 SPATA20Q8TB22 786 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 TATDN2Q93075 761 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 GSDMAQ96QA5 445 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 ACOX2Q99424 681 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 CALCOCO1Q9P1Z2 691 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 RASAL2Q9UJF2 1139 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 CIZ1Q9ULV3 898 aaPredicted RBP18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 COQ4Q9Y3A0 265 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 CEP295Q9C0D2 2601 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 PCDH15Q96QU1 1955 aa18.28■□□□□ 0.52
CHMP1A-205ENST00000548650 ASCC3Q8N3C0 2202 aaKnown RBP18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 CKAP5Q14008 2032 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 TRIM49BA6NDI0 452 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 KHNYNO15037 678 aaKnown RBP18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 CISD3P0C7P0 127 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 RALAP11233 206 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 PMLP29590 882 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 NTSR1P30989 418 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 WASP42768 502 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 N4BP2L1Q5TBK1 243 aaPredicted RBP18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 TCERG1LQ5VWI1 586 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 TMEFF1Q8IYR6 380 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 PIGKQ92643 395 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 ERCC4Q92889 916 aaPredicted RBP18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 BHMTQ93088 406 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 SLC35C1Q96A29 364 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 CDK5RAP1Q96SZ6 601 aaKnown RBP18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 TSG101Q99816 390 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 GABRG3Q99928 467 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 UBXN6Q9BZV1 441 aa18.27■□□□□ 0.52
CHMP1A-205ENST00000548650 MUC22E2RYF6 1773 aaPredicted RBP18.27■□□□□ 0.51
CHMP1A-205ENST00000548650 C4orf47A7E2U8 309 aa18.26■□□□□ 0.51
CHMP1A-205ENST00000548650 KCNK5O95279 499 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms