RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 SMARCE1Q969G3 411 aa14.04□□□□□ -0.16
CPSF6-204ENST00000547486 ACOX2Q99424 681 aa14.04□□□□□ -0.16
CPSF6-204ENST00000547486 BBS2Q9BXC9 721 aa14.04□□□□□ -0.16
CPSF6-204ENST00000547486 UBXN6Q9BZV1 441 aa14.04□□□□□ -0.16
CPSF6-204ENST00000547486 DNAJC17Q9NVM6 304 aaKnown RBP14.04□□□□□ -0.16
CPSF6-204ENST00000547486 MARK1Q9P0L2 795 aa14.04□□□□□ -0.16
CPSF6-204ENST00000547486 STARD13Q9Y3M8 1113 aa14.04□□□□□ -0.16
CPSF6-204ENST00000547486 LAMA1P25391 3075 aa14.04□□□□□ -0.16
CPSF6-204ENST00000547486 PRRT4C9JH25 899 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 SLC16A3O15427 465 aaKnown RBP14.03□□□□□ -0.16
CPSF6-204ENST00000547486 CACNG3O60359 315 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 STC2O76061 302 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 SMC2O95347 1197 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 CISD3P0C7P0 127 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 WASP42768 502 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 NUCB2P80303 420 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 STPG1Q5TH74 334 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 GRAMD4Q6IC98 578 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 TTC39CQ8N584 583 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 ZNF513Q8N8E2 541 aaPredicted RBP14.03□□□□□ -0.16
CPSF6-204ENST00000547486 ANKRD52Q8NB46 1076 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 KCNV2Q8TDN2 545 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 HMGB4Q8WW32 186 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 BHMTQ93088 406 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 SLC35C1Q96A29 364 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 TIGD1Q96MW7 591 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 TSG101Q99816 390 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 POLMQ9NP87 494 aaPredicted RBP14.03□□□□□ -0.16
CPSF6-204ENST00000547486 PLK2Q9NYY3 685 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 CLIC5Q9NZA1 410 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 WDR35Q9P2L0 1181 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 MBD1Q9UIS9 605 aaPredicted RBP14.03□□□□□ -0.16
CPSF6-204ENST00000547486 LSM7Q9UK45 103 aaKnown RBP14.03□□□□□ -0.16
CPSF6-204ENST00000547486 KIAA1549LQ6ZVL6 1849 aa14.03□□□□□ -0.16
CPSF6-204ENST00000547486 A0A1W2PQF6 199 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 TCRBV21S2A2A0A5A6 115 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 PATE3B3GLJ2 98 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 ALDH1A2O94788 518 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 HMBSP08397 361 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 ADRB1P08588 477 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 RALAP11233 206 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 BMP6P22004 513 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 P2RY2P41231 377 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 PSEN1P49768 467 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 LRRC63Q05C16 580 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 GOLGA8FQ08AF8 430 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 GOLGA8DPQ0D2H9 430 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 EFEMP1Q12805 493 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 LRMPQ12912 555 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 CUL2Q13617 745 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 BECN1Q14457 450 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 MAP7D1Q3KQU3 841 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 EGFLAMQ63HQ2 1017 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 BHLHA9Q7RTU4 235 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 UBR7Q8N806 425 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 ERLEC1Q96DZ1 483 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 DNAI2Q9GZS0 605 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 CD248Q9HCU0 757 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 ARMCX3Q9UH62 379 aaPredicted RBP14.02□□□□□ -0.17
CPSF6-204ENST00000547486 FBXO10Q9UK96 956 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 MAN1B1Q9UKM7 699 aa14.02□□□□□ -0.17
CPSF6-204ENST00000547486 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 GABRG2P18507 467 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 NTSR1P30989 418 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 TKTL1P51854 596 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 YWHAGP61981 247 aaKnown RBP eCLIP14.01□□□□□ -0.17
CPSF6-204ENST00000547486 PDE4CQ08493 712 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 GOLGA7BQ2TAP0 167 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 PREPLQ4J6C6 727 aaPredicted RBP14.01□□□□□ -0.17
CPSF6-204ENST00000547486 IL31Q6EBC2 164 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 PM20D1Q6GTS8 502 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 KIAA1211LQ6NV74 962 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 TADA2BQ86TJ2 420 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 C11orf74Q86VG3 221 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 TMEFF1Q8IYR6 380 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 PGBD3Q8N328 593 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 UBA3Q8TBC4 463 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 DHTKD1Q96HY7 919 aaPredicted RBP14.01□□□□□ -0.17
CPSF6-204ENST00000547486 CNTNAP3BQ96NU0 1288 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 XPO6Q96QU8 1125 aaKnown RBP14.01□□□□□ -0.17
CPSF6-204ENST00000547486 CNTNAP3Q9BZ76 1288 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 FAM124BQ9H5Z6 455 aaPredicted RBP14.01□□□□□ -0.17
CPSF6-204ENST00000547486 BCCIPQ9P287 314 aaKnown RBP eCLIP14.01□□□□□ -0.17
CPSF6-204ENST00000547486 RASAL2Q9UJF2 1139 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 AGO1Q9UL18 857 aaKnown RBP14.01□□□□□ -0.17
CPSF6-204ENST00000547486 CIZ1Q9ULV3 898 aaPredicted RBP14.01□□□□□ -0.17
CPSF6-204ENST00000547486 SPTBN2O15020 2390 aa14.01□□□□□ -0.17
CPSF6-204ENST00000547486 ABCA7Q8IZY2 2146 aa14□□□□□ -0.17
CPSF6-204ENST00000547486 LNP1A1A4G5 178 aa14□□□□□ -0.17
CPSF6-204ENST00000547486 PPP1R3GB7ZBB8 358 aa14□□□□□ -0.17
CPSF6-204ENST00000547486 WASH3PC4AMC7 463 aa14□□□□□ -0.17
CPSF6-204ENST00000547486 RNF225M0QZC1 329 aaPredicted RBP14□□□□□ -0.17
CPSF6-204ENST00000547486 GABBR2O75899 941 aa14□□□□□ -0.17
CPSF6-204ENST00000547486 ZBED1O96006 694 aa14□□□□□ -0.17
CPSF6-204ENST00000547486 CORO1AP31146 461 aaKnown RBP14□□□□□ -0.17
CPSF6-204ENST00000547486 PTGER3P43115 390 aa14□□□□□ -0.17
CPSF6-204ENST00000547486 FMO5P49326 533 aa14□□□□□ -0.17
CPSF6-204ENST00000547486 DHPSP49366 369 aaPredicted RBP14□□□□□ -0.17
CPSF6-204ENST00000547486 DGKGP49619 791 aa14□□□□□ -0.17
CPSF6-204ENST00000547486 IRX4P78413 519 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms