RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 GOLGA8SH3BPF8 625 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 LEFTY2O00292 366 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 SLC9A3R1O14745 358 aaPredicted RBP14.39□□□□□ -0.11
PTCH1-213ENST00000546820 AKR1B10O60218 316 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 PRAMEF12O95522 483 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 GBP1P32455 592 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 EIF4A3P38919 411 aaKnown RBP14.39□□□□□ -0.11
PTCH1-213ENST00000546820 MRE11P49959 708 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 RNASE9P60153 205 aaKnown RBP14.39□□□□□ -0.11
PTCH1-213ENST00000546820 MAPK8IP2Q13387 824 aaPredicted RBP14.39□□□□□ -0.11
PTCH1-213ENST00000546820 DCAF6Q58WW2 860 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 OLFML1Q6UWY5 402 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 VITQ6UXI7 678 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 HFE2Q6ZVN8 426 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 MIB1Q86YT6 1006 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 UBALD2Q8IYN6 164 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 MCOLN2Q8IZK6 566 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 TC2NQ8N9U0 490 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 ST13P5Q8NFI4 369 aaPredicted RBP14.39□□□□□ -0.11
PTCH1-213ENST00000546820 PANX2Q96RD6 677 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 RPP25Q9BUL9 199 aaKnown RBP14.39□□□□□ -0.11
PTCH1-213ENST00000546820 KLF16Q9BXK1 252 aaPredicted RBP14.39□□□□□ -0.11
PTCH1-213ENST00000546820 PLA2G2FQ9BZM2 168 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 DCLK3Q9C098 648 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 BRD9Q9H8M2 597 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 GKN1Q9NS71 199 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 TBC1D14Q9P2M4 693 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 LSM7Q9UK45 103 aaKnown RBP14.39□□□□□ -0.11
PTCH1-213ENST00000546820 NAALADL1Q9UQQ1 740 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 CCL26Q9Y258 94 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 HBS1LQ9Y450 684 aaKnown RBP14.39□□□□□ -0.11
PTCH1-213ENST00000546820 OBSL1O75147 1896 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 MYO16Q9Y6X6 1858 aa14.39□□□□□ -0.11
PTCH1-213ENST00000546820 MYO10Q9HD67 2058 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 SLC12A8A0AV02 714 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 E2F8A0AVK6 867 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 CHADO15335 359 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 PLEKP08567 350 aaPredicted RBP14.38□□□□□ -0.11
PTCH1-213ENST00000546820 MYBL1P10243 752 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 KRT3P12035 628 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 GDI1P31150 447 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 NOS2P35228 1153 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 GSCP56915 257 aaPredicted RBP14.38□□□□□ -0.11
PTCH1-213ENST00000546820 PFKPQ01813 784 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 FCHO2Q0JRZ9 810 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 PTP4A2Q12974 167 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 TAF5Q15542 800 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 C2CD6Q53TS8 623 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 CCDC122Q5T0U0 273 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 MSANTD2Q6P1R3 559 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 ALKBH5Q6P6C2 394 aaKnown RBP14.38□□□□□ -0.11
PTCH1-213ENST00000546820 MON1BQ7L1V2 547 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 ARCQ7LC44 396 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 DEFB106AQ8N104 65 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 SPC24Q8NBT2 197 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 IRF7Q92985 503 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 SERPINB11Q96P15 392 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 SELENOOQ9BVL4 669 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 ISCUQ9H1K1 167 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 NHEJ1Q9H9Q4 299 aaPredicted RBP14.38□□□□□ -0.11
PTCH1-213ENST00000546820 CD320Q9NPF0 282 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.38□□□□□ -0.11
PTCH1-213ENST00000546820 CFAP97Q9P2B7 532 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 STAP1Q9ULZ2 295 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 ZNF510Q9Y2H8 683 aa14.38□□□□□ -0.11
PTCH1-213ENST00000546820 A0A087X0T9 212 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 FAM170AA1A519 330 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 SIGLEC16A6NMB1 481 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 DAB1O75553 588 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 GRAP2O75791 330 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 FYNP06241 537 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 FAM228BP0C875 321 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 SRFP11831 508 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 ALADP13716 330 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 DESP17661 470 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 MATKP42679 507 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 HARS2P49590 506 aaKnown RBP14.37□□□□□ -0.11
PTCH1-213ENST00000546820 GSDMDP57764 484 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 GRM2Q14416 872 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 MTF1Q14872 753 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 PDGFRLQ15198 375 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 ZNF77Q15935 545 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 SLC18A3Q16572 532 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 SYPL2Q5VXT5 272 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 DNAJC24Q6P3W2 148 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 HTR3DQ70Z44 454 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 TMTC1Q8IUR5 882 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 UNC45BQ8IWX7 931 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 CSGALNACT1Q8TDX6 532 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 PLD4Q96BZ4 506 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 OTUB2Q96DC9 234 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 RSPRY1Q96DX4 576 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 SLC2A13Q96QE2 648 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 CHP1Q99653 195 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 MRPL47Q9HD33 250 aaKnown RBP14.37□□□□□ -0.11
PTCH1-213ENST00000546820 PARVAQ9NVD7 372 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 DUS2Q9NX74 493 aaKnown RBP14.37□□□□□ -0.11
PTCH1-213ENST00000546820 TAS2R14Q9NYV8 317 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 SFMBT1Q9UHJ3 866 aa14.37□□□□□ -0.11
PTCH1-213ENST00000546820 SLC12A6Q9UHW9 1150 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms