RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 ZNF883P0CG24 379 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 NCAM1P13591 858 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 TYRP14679 529 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 MATKP42679 507 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 TUBP50607 506 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 HLA-BQ31612 363 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 DBX2Q6ZNG2 339 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 TPGS1Q6ZTW0 290 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 HTR3DQ70Z44 454 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 TRAPPC11Q7Z392 1133 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 METTL3Q86U44 580 aaKnown RBP13.5□□□□□ -0.25
SCAF11-208ENST00000546534 CBWD2Q8IUF1 395 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 B3GALNT2Q8NCR0 500 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 RHBDD1Q8TEB9 315 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 XPO6Q96QU8 1125 aaKnown RBP13.5□□□□□ -0.25
SCAF11-208ENST00000546534 KIF2CQ99661 725 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 CDC6Q99741 560 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 IL37Q9NZH6 218 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 GMIPQ9P107 970 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 USP36Q9P275 1121 aaKnown RBP13.5□□□□□ -0.25
SCAF11-208ENST00000546534 STK17AQ9UEE5 414 aa13.5□□□□□ -0.25
SCAF11-208ENST00000546534 FAM149AA5PLN7 773 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 A8MXQ7 604 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 KCNJ18B7U540 433 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 BCAT2O15382 392 aaPredicted RBP13.49□□□□□ -0.25
SCAF11-208ENST00000546534 EIF5BO60841 1220 aaKnown RBP13.49□□□□□ -0.25
SCAF11-208ENST00000546534 CER1O95813 267 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 BMP15O95972 392 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 FAM163BP0C2L3 166 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 CISD3P0C7P0 127 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 ZDHHC11BP0C7U3 371 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 IDEP14735 1019 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 PGFP49763 221 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 SLC5A3P53794 718 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 C19orf57Q0VDD7 668 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 ALCAMQ13740 583 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 SURF1Q15526 300 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 WDR72Q3MJ13 1102 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 FUT11Q495W5 492 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 DCAF12L1Q5VU92 463 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 WDR49Q8IV35 697 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 SCUBE3Q8IX30 993 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 CADM4Q8NFZ8 388 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 NACA2Q9H009 215 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 NPDC1Q9NQX5 325 aaPredicted RBP13.49□□□□□ -0.25
SCAF11-208ENST00000546534 ITM2CQ9NQX7 267 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 MARK1Q9P0L2 795 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 WDR35Q9P2L0 1181 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 BTBD3Q9Y2F9 522 aa13.49□□□□□ -0.25
SCAF11-208ENST00000546534 METTL12A8MUP2 240 aa13.48□□□□□ -0.25
SCAF11-208ENST00000546534 KIAA0391O15091 583 aaKnown RBP13.48□□□□□ -0.25
SCAF11-208ENST00000546534 FLRT2O43155 660 aa13.48□□□□□ -0.25
SCAF11-208ENST00000546534 TBX18O95935 607 aa13.48□□□□□ -0.25
SCAF11-208ENST00000546534 PRKCSHP14314 528 aaPredicted RBP13.48□□□□□ -0.25
SCAF11-208ENST00000546534 GJB2P29033 226 aa13.48□□□□□ -0.25
SCAF11-208ENST00000546534 DGKGP49619 791 aa13.48□□□□□ -0.25
SCAF11-208ENST00000546534 SF3A1Q15459 793 aaKnown RBP13.48□□□□□ -0.25
SCAF11-208ENST00000546534 IL27RAQ6UWB1 636 aa13.48□□□□□ -0.25
SCAF11-208ENST00000546534 PAQR9Q6ZVX9 377 aa13.48□□□□□ -0.25
SCAF11-208ENST00000546534 SV2BQ7L1I2 683 aa13.48□□□□□ -0.25
SCAF11-208ENST00000546534 FAM35AQ86V20 835 aa13.48□□□□□ -0.25
SCAF11-208ENST00000546534 GALNT15Q8N3T1 639 aa13.48□□□□□ -0.25
SCAF11-208ENST00000546534 BHMTQ93088 406 aa13.48□□□□□ -0.25
SCAF11-208ENST00000546534 UBL7Q96S82 380 aaPredicted RBP13.48□□□□□ -0.25
SCAF11-208ENST00000546534 KLF16Q9BXK1 252 aaPredicted RBP13.48□□□□□ -0.25
SCAF11-208ENST00000546534 MKRN2Q9H000 416 aaKnown RBP13.48□□□□□ -0.25
SCAF11-208ENST00000546534 EIF2B4Q9UI10 523 aaKnown RBP13.48□□□□□ -0.25
SCAF11-208ENST00000546534 PCDHGB2Q9Y5G2 931 aa13.48□□□□□ -0.25
SCAF11-208ENST00000546534 STON1Q9Y6Q2 735 aa13.48□□□□□ -0.25
SCAF11-208ENST00000546534 ASH1LQ9NR48 2969 aaKnown RBP13.47□□□□□ -0.25
SCAF11-208ENST00000546534 A0A1B0GVT2 93 aa13.47□□□□□ -0.25
SCAF11-208ENST00000546534 FAM92AA1XBS5 289 aa13.47□□□□□ -0.25
SCAF11-208ENST00000546534 TLR5O60602 858 aa13.47□□□□□ -0.25
SCAF11-208ENST00000546534 C1QL1O75973 258 aa13.47□□□□□ -0.25
SCAF11-208ENST00000546534 TPMTP51580 245 aa13.47□□□□□ -0.25
SCAF11-208ENST00000546534 TNNC1P63316 161 aa13.47□□□□□ -0.25
SCAF11-208ENST00000546534 STARD3Q14849 445 aa13.47□□□□□ -0.25
SCAF11-208ENST00000546534 RRAGBQ5VZM2 374 aa13.47□□□□□ -0.25
SCAF11-208ENST00000546534 C1orf216Q8TAB5 229 aa13.47□□□□□ -0.25
SCAF11-208ENST00000546534 MED10Q9BTT4 135 aa13.47□□□□□ -0.25
SCAF11-208ENST00000546534 DMAP1Q9NPF5 467 aaPredicted RBP13.47□□□□□ -0.25
SCAF11-208ENST00000546534 PANK4Q9NVE7 773 aa13.47□□□□□ -0.25
SCAF11-208ENST00000546534 PLK2Q9NYY3 685 aa13.47□□□□□ -0.25
SCAF11-208ENST00000546534 HSPBP1Q9NZL4 362 aa13.47□□□□□ -0.25
SCAF11-208ENST00000546534 CCDC39Q9UFE4 941 aa13.47□□□□□ -0.25
SCAF11-208ENST00000546534 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.47□□□□□ -0.25
SCAF11-208ENST00000546534 ATP8B3O60423 1300 aa13.46□□□□□ -0.25
SCAF11-208ENST00000546534 FRMD3A2A2Y4 597 aa13.46□□□□□ -0.25
SCAF11-208ENST00000546534 DLATP10515 647 aaKnown RBP13.46□□□□□ -0.25
SCAF11-208ENST00000546534 TNNI1P19237 187 aa13.46□□□□□ -0.25
SCAF11-208ENST00000546534 ABCG1P45844 678 aa13.46□□□□□ -0.25
SCAF11-208ENST00000546534 CSNK1EP49674 416 aaKnown RBP13.46□□□□□ -0.25
SCAF11-208ENST00000546534 MYL6P60660 151 aa13.46□□□□□ -0.25
SCAF11-208ENST00000546534 SMAD1Q15797 465 aaKnown RBP13.46□□□□□ -0.25
SCAF11-208ENST00000546534 TMPRSS6Q8IU80 811 aa13.46□□□□□ -0.25
SCAF11-208ENST00000546534 RDH13Q8NBN7 331 aa13.46□□□□□ -0.25
SCAF11-208ENST00000546534 PIP4K2CQ8TBX8 421 aa13.46□□□□□ -0.25
SCAF11-208ENST00000546534 SIPA1Q96FS4 1042 aa13.46□□□□□ -0.25
SCAF11-208ENST00000546534 P2RY11Q96G91 374 aa13.46□□□□□ -0.25
SCAF11-208ENST00000546534 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms