RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 CHORDC1Q9UHD1 332 aaPredicted RBP16.36■□□□□ 0.21
CLSTN3-216ENST00000545663 LAD1O00515 517 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 EPB41L2O43491 1005 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 PFKFB2O60825 505 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 REC8O95072 547 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 PIGRP01833 764 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 ITGB3P05106 788 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 ITGAVP06756 1048 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 ACADMP11310 421 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 PLCG1P19174 1290 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 ANXA13P27216 316 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 NOP14P78316 857 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 SOWAHAQ2M3V2 549 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 C4orf17Q53FE4 359 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 C4orf50Q6ZRC1 276 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 TMEM86AQ8N2M4 240 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 SAP25Q8TEE9 199 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 ZNF578Q96N58 590 aaPredicted RBP16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 XPO6Q96QU8 1125 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 ORAI3Q9BRQ5 295 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 CCSER2Q9H7U1 834 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 SNX9Q9Y5X1 595 aa16.35■□□□□ 0.21
CLSTN3-216ENST00000545663 GREM1O60565 184 aa16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 FSBPO95073 299 aa16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 PDGFRBP09619 1106 aa16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 ABCB4P21439 1286 aa16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 PCSK1P29120 753 aa16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 PNPLA4P41247 253 aa16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 DGKGP49619 791 aa16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 UBAP2LQ14157 1087 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 ZRSR1Q15695 479 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 TDRD10Q5VZ19 366 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 CRELD2Q6UXH1 353 aaPredicted RBP16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 ADAT2Q7Z6V5 191 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 C1orf127Q8N9H9 656 aa16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 CXorf38Q8TB03 319 aa16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 ELF4Q99607 663 aaPredicted RBP16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 SYT15Q9BQS2 421 aa16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 MMTAG2Q9BU76 263 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 TIPINQ9BVW5 301 aa16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 PDRG1Q9NUG6 133 aa16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 PLK2Q9NYY3 685 aa16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 KCNG1Q9UIX4 513 aa16.34■□□□□ 0.21
CLSTN3-216ENST00000545663 SYNCRIPO60506 623 aaKnown RBP16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 TSPAN3O60637 253 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 LHX1P48742 406 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 TFAMQ00059 246 aaKnown RBP16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 GUCY1B3Q02153 619 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 ORC1Q13415 861 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 ARSHQ5FYA8 562 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 ADALQ6DHV7 355 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 ATG14Q6ZNE5 492 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 NECAB1Q8N987 351 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 IGSF22Q8N9C0 903 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 RFFLQ8WZ73 363 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 PCED1BQ96HM7 432 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 SLITRK1Q96PX8 696 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 PLIN2Q99541 437 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 PCED1AQ9H1Q7 454 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 THAP10Q9P2Z0 257 aaPredicted RBP16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 SSUH2Q9Y2M2 353 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 DOPEY1Q5JWR5 2465 aa16.33■□□□□ 0.2
CLSTN3-216ENST00000545663 ITPR2Q14571 2701 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 K7ENP7 123 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 DFNA5O60443 496 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 MT-CO3P00414 261 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 WNT1P04628 370 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 PRKCHP24723 683 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 CD27P26842 260 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 PGFP49763 221 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 C21orf59P57076 290 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 PTPRJQ12913 1337 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 BNIP3Q12983 259 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 ENPP2Q13822 863 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 IL17AQ16552 155 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 GEN1Q17RS7 908 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 HECTD3Q5T447 861 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 HIST2H2BCQ6DN03 193 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 INO80CQ6PI98 192 aaPredicted RBP16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 CACTIN-AS1Q8N1I8 211 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 KBTBD7Q8WVZ9 684 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 C8orf48Q96LL4 319 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 CEP295NLQ96MC4 621 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 GDAP2Q9NXN4 497 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 EHD2Q9NZN4 543 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 WDR35Q9P2L0 1181 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 PAXBP1Q9Y5B6 917 aa16.32■□□□□ 0.2
CLSTN3-216ENST00000545663 SUV39H1O43463 412 aa16.31■□□□□ 0.2
CLSTN3-216ENST00000545663 KRT38O76015 456 aa16.31■□□□□ 0.2
CLSTN3-216ENST00000545663 ACO1P21399 889 aaKnown RBP16.31■□□□□ 0.2
CLSTN3-216ENST00000545663 GABREP78334 506 aa16.31■□□□□ 0.2
CLSTN3-216ENST00000545663 CSGALNACT2Q8N6G5 542 aa16.31■□□□□ 0.2
CLSTN3-216ENST00000545663 TOP6BLQ8N6T0 577 aa16.31■□□□□ 0.2
CLSTN3-216ENST00000545663 ZSWIM2Q8NEG5 633 aa16.31■□□□□ 0.2
CLSTN3-216ENST00000545663 SORCS1Q8WY21 1168 aa16.31■□□□□ 0.2
CLSTN3-216ENST00000545663 SLC6A18Q96N87 628 aa16.31■□□□□ 0.2
CLSTN3-216ENST00000545663 DPH1Q9BZG8 443 aa16.31■□□□□ 0.2
CLSTN3-216ENST00000545663 MARK1Q9P0L2 795 aa16.31■□□□□ 0.2
CLSTN3-216ENST00000545663 AGO2Q9UKV8 859 aaKnown RBP16.31■□□□□ 0.2
CLSTN3-216ENST00000545663 MYH11P35749 1972 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms