RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 CHUKO15111 745 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 MT-ND3P03897 115 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 NQO1P15559 274 aaKnown RBP18.71■□□□□ 0.59
VIM-209ENST00000544301 KCNJ2P63252 427 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 GBE1Q04446 702 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 FAAP100Q0VG06 881 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 SLC10A2Q12908 348 aaPredicted RBP18.71■□□□□ 0.59
VIM-209ENST00000544301 SNX17Q15036 470 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 XKR4Q5GH76 650 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 UBXN11Q5T124 520 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 CDKL3Q8IVW4 592 aaPredicted RBP18.71■□□□□ 0.59
VIM-209ENST00000544301 ZNF276Q8N554 614 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 CFAP36Q96G28 342 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 ZNF560Q96MR9 790 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 ETNK1Q9HBU6 452 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 CYLDQ9NQC7 956 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 SLC5A4Q9NY91 659 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 SLC17A7Q9P2U7 560 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 AP4E1Q9UPM8 1137 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 IKBKGQ9Y6K9 419 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 ECM2O94769 699 aaPredicted RBP18.7■□□□□ 0.58
VIM-209ENST00000544301 C1QAP02745 245 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 APRTP07741 180 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 KCNE1P15382 129 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 SEPT7Q16181 437 aaKnown RBP18.7■□□□□ 0.58
VIM-209ENST00000544301 LIMS2Q7Z4I7 341 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 PRPF39Q86UA1 669 aaKnown RBP18.7■□□□□ 0.58
VIM-209ENST00000544301 SLC2A14Q8TDB8 520 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 LENG1Q96BZ8 264 aaPredicted RBP18.7■□□□□ 0.58
VIM-209ENST00000544301 SERAC1Q96JX3 654 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 KCTD15Q96SI1 283 aaPredicted RBP18.7■□□□□ 0.58
VIM-209ENST00000544301 C12orf65Q9H3J6 166 aaKnown RBP18.7■□□□□ 0.58
VIM-209ENST00000544301 GOLGA2P5Q9HBQ8 144 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 POPDC2Q9HBU9 364 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 TTLL3Q9Y4R7 772 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 USH1CQ9Y6N9 552 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 PCNTO95613 3336 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 DCAF8L1A6NGE4 600 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 INHBAP08476 426 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 ZFXP17010 805 aaPredicted RBP18.7■□□□□ 0.58
VIM-209ENST00000544301 PNPLA4P41247 253 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 ACADSBP45954 432 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 SOX4Q06945 474 aaPredicted RBP18.7■□□□□ 0.58
VIM-209ENST00000544301 SLC45A4Q5BKX6 768 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 SPRYD7Q5W111 196 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 OTOAQ7RTW8 1153 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 TLK2Q86UE8 772 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 CCDC185Q8N715 623 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 APPL2Q8NEU8 664 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 HSFY1Q96LI6 401 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 GTF2IRD1Q9UHL9 959 aa18.7■□□□□ 0.58
VIM-209ENST00000544301 IGF2BP3O00425 579 aaKnown RBP eCLIP18.69■□□□□ 0.58
VIM-209ENST00000544301 TREHO43280 583 aa18.69■□□□□ 0.58
VIM-209ENST00000544301 GCATO75600 419 aa18.69■□□□□ 0.58
VIM-209ENST00000544301 ALADP13716 330 aa18.69■□□□□ 0.58
VIM-209ENST00000544301 PSEN2P49810 448 aa18.69■□□□□ 0.58
VIM-209ENST00000544301 TAF6P49848 677 aa18.69■□□□□ 0.58
VIM-209ENST00000544301 SWT1Q5T5J6 900 aaKnown RBP18.69■□□□□ 0.58
VIM-209ENST00000544301 OLFML2BQ68BL8 750 aa18.69■□□□□ 0.58
VIM-209ENST00000544301 C4orf22Q6V702 233 aa18.69■□□□□ 0.58
VIM-209ENST00000544301 SH2D5Q6ZV89 423 aa18.69■□□□□ 0.58
VIM-209ENST00000544301 ASRGL1Q7L266 308 aa18.69■□□□□ 0.58
VIM-209ENST00000544301 KLHL29Q96CT2 875 aa18.69■□□□□ 0.58
VIM-209ENST00000544301 CSPG4P5Q96PW8 444 aa18.69■□□□□ 0.58
VIM-209ENST00000544301 PLAC1Q9HBJ0 212 aa18.69■□□□□ 0.58
VIM-209ENST00000544301 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.69■□□□□ 0.58
VIM-209ENST00000544301 ZC3H7BQ9UGR2 993 aaKnown RBP18.69■□□□□ 0.58
VIM-209ENST00000544301 WDR91A4D1P6 747 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 XPOTO43592 962 aaKnown RBP18.68■□□□□ 0.58
VIM-209ENST00000544301 METTL18O95568 372 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 ATP6V1G2O95670 118 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 TKTP29401 623 aaKnown RBP18.68■□□□□ 0.58
VIM-209ENST00000544301 SKIV2L2P42285 1042 aaKnown RBP18.68■□□□□ 0.58
VIM-209ENST00000544301 NR2C2P49116 596 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 SLC18A2Q05940 514 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 MCUQ8NE86 351 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 C10orf82Q8WW14 230 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 TSPAN18Q96SJ8 248 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 MYLK2Q9H1R3 596 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 VPS11Q9H270 941 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 ARHGEF3Q9NR81 526 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 CHKBQ9Y259 395 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 ZNF236Q9UL36 1845 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 HAS3O00219 553 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 LPXNO60711 386 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 CCNB1P14635 433 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 NEK3P51956 506 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 SV2CQ496J9 727 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 MORN1Q5T089 497 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 STRADAQ7RTN6 431 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 SLC26A11Q86WA9 606 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 ADGRF2Q8IZF7 708 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 MAGEC3Q8TD91 643 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 QKIQ96PU8 341 aaKnown RBP eCLIP18.68■□□□□ 0.58
VIM-209ENST00000544301 FLRT1Q9NZU1 646 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 TRIM33Q9UPN9 1127 aa18.68■□□□□ 0.58
VIM-209ENST00000544301 HUS1O60921 280 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 TOMM70O94826 608 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 ZNF865P0CJ78 1059 aaPredicted RBP18.67■□□□□ 0.58
VIM-209ENST00000544301 MAGEA3P43357 314 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms