RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	STAP1	Q9ULZ2	295 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	NENF	Q9UMX5	172 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	DAB1	O75553	588 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	LCA5L	O95447	670 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	OAS1	P00973	400 aa	Known RBP	10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	CYP1A2	P05177	515 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	HMBS	P08397	361 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	PFKL	P17858	780 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	GPD1	P21695	349 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	SDC4	P31431	198 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	GBP1	P32455	592 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	NOS2	P35228	1153 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	RFC1	P35251	1148 aa	Predicted RBP	10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	MATK	P42679	507 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	SULT1E1	P49888	294 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	KIF5A	Q12840	1032 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	NME3	Q13232	169 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	SYPL2	Q5VXT5	272 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	ARID3B	Q8IVW6	561 aa	Predicted RBP	10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	CMTM8	Q8IZV2	173 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	TDRD5	Q8NAT2	981 aa	Known RBP	10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	ST13P5	Q8NFI4	369 aa	Predicted RBP	10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	ADAM32	Q8TC27	787 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	DQX1	Q8TE96	717 aa	Known RBP	10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	RNF34	Q969K3	372 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	SLC2A13	Q96QE2	648 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	SLC22A12	Q96S37	553 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	MYADM	Q96S97	322 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	PHF7	Q9BWX1	381 aa	Predicted RBP	10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	RNF38	Q9H0F5	515 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	TMEM59L	Q9UK28	342 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	TFR2	Q9UP52	801 aa		10.61	□□□□□ -0.71
CPSF7-221	ENST00000543545	TMEM191C	A6NGB0	347 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	SOBP	A7XYQ1	873 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	TMEM110-MUSTN1	A8MSY1	372 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545		M0QYT0	321 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	MYO1F	O00160	1098 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	TRUB2	O95900	331 aa	Known RBP	10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	FYN	P06241	537 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	CCDC175	P0C221	793 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	IRF1	P10914	325 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	LAMP2	P13473	410 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	IL9	P15248	144 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	PSMA2	P25787	234 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	FLT3	P36888	993 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	VAV2	P52735	878 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	GSC	P56915	257 aa	Predicted RBP	10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	RPL7A	P62424	266 aa	Known RBP	10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	COG7	P83436	770 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	ATP11A	P98196	1134 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	SMAD2	Q15796	467 aa	Known RBP	10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	CDO1	Q16878	200 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	FAM78A	Q5JUQ0	283 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	KLHDC10	Q6PID8	442 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	SND1	Q7KZF4	910 aa	Known RBP eCLIP	10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	BEND5	Q7L4P6	421 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	SLC35G2	Q8TBE7	412 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	ZNF564	Q8TBZ8	553 aa	Predicted RBP	10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	SMARCD2	Q92925	531 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	KHSRP	Q92945	711 aa	Known RBP eCLIP	10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	CFAP57	Q96MR6	1250 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	SERPINB11	Q96P15	392 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	DDX23	Q9BUQ8	820 aa	Known RBP	10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	GKN1	Q9NS71	199 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	DDIT4	Q9NX09	232 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	RRN3	Q9NYV6	651 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	UVRAG	Q9P2Y5	699 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	ANAPC7	Q9UJX3	599 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	REXO2	Q9Y3B8	237 aa	Known RBP	10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	SH3BP1	Q9Y3L3	701 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	NR2E1	Q9Y466	385 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	CPQ	Q9Y646	472 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	ADGRG1	Q9Y653	693 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	CDH23	Q9H251	3354 aa		10.6	□□□□□ -0.71
CPSF7-221	ENST00000543545	TCRBV5S1A1T	A0A578	114 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	C2CD4B	A6NLJ0	364 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	C2CD4D	B7Z1M9	353 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	MSI1	O43347	362 aa	Known RBP	10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	VIPR2	P41587	438 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	SSR1	P43307	286 aa	Known RBP	10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	KCNQ1	P51787	676 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	KPNA1	P52294	538 aa	Predicted RBP	10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	ZNF143	P52747	638 aa	Predicted RBP	10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	TBX4	P57082	545 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	SLC7A9	P82251	487 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	DEUP1	Q05D60	604 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	C15orf59	Q2T9L4	293 aa	Predicted RBP	10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	SLC25A52	Q3SY17	297 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	CCDC14	Q49A88	953 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	PPP1R15B	Q5SWA1	713 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	MSANTD2	Q6P1R3	559 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	SCYL2	Q6P3W7	929 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	ARC	Q7LC44	396 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	TAC4	Q86UU9	113 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	DDX42	Q86XP3	938 aa	Known RBP eCLIP	10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	RHOT2	Q8IXI1	618 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	PLCD3	Q8N3E9	789 aa		10.59	□□□□□ -0.71
CPSF7-221	ENST00000543545	ZNF276	Q8N554	614 aa		10.59	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms