RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 ASIC1P78348 528 aa18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 SOWAHCQ53LP3 525 aaPredicted RBP18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 SYCP2LQ5T4T6 812 aa18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 CNNM4Q6P4Q7 775 aa18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 SCARA5Q6ZMJ2 495 aa18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 CCNI2Q6ZMN8 369 aaPredicted RBP18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 GPRIN1Q7Z2K8 1008 aa18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 SLCO6A1Q86UG4 719 aa18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 TNIP3Q96KP6 325 aa18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 CYLDQ9NQC7 956 aa18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 WDR35Q9P2L0 1181 aa18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 PCDHB9Q9Y5E1 797 aa18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 MUC22E2RYF6 1773 aaPredicted RBP18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 GCN1Q92616 2671 aaKnown RBP18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 UBE4BO95155 1302 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 GFRA2O00451 464 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 VNN1O95497 513 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 PDCP20941 246 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 CD6P30203 668 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 DGKGP49619 791 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 MAP3K7CLP57077 242 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 SNRPFP62306 86 aaKnown RBP18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 ORC1Q13415 861 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 COL28A1Q2UY09 1125 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 ZNF699Q32M78 642 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 ZNF667Q5HYK9 610 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 WDR45BQ5MNZ6 344 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 KIAA1324Q6UXG2 1013 aaKnown RBP18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 GLRX5Q86SX6 157 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 C12orf56Q8IXR9 622 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 SLC2A14Q8TDB8 520 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 DNASE2BQ8WZ79 361 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 FOXJ1Q92949 421 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 LRRC27Q9C0I9 530 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 TLR8Q9NR97 1041 aaKnown RBP18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 PLK2Q9NYY3 685 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 HMGXB4Q9UGU5 601 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 FBXO10Q9UK96 956 aa18.81■□□□□ 0.6
CLSTN3-214ENST00000542663 APC2O95996 2303 aa18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 KCNJ18B7U540 433 aa18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 HHLA1C9JL84 531 aa18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 PHACTR2O75167 634 aa18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 GNSP15586 552 aa18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 ATP5C1P36542 298 aaKnown RBP18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 NASPP49321 788 aaPredicted RBP18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 FUT11Q495W5 492 aa18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 Q6ZNB5 142 aa18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 METTL3Q86U44 580 aaKnown RBP18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 PDZD3Q86UT5 571 aa18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 MDM1Q8TC05 714 aa18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 BHMTQ93088 406 aa18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 TOE1Q96GM8 510 aaKnown RBP18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 MKRN2Q9H000 416 aaKnown RBP18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 FBXO44Q9H4M3 255 aa18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 IL21RQ9HBE5 538 aa18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 WSB2Q9NYS7 404 aaPredicted RBP18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 USP36Q9P275 1121 aaKnown RBP18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 PCOLCE2Q9UKZ9 415 aa18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 STON1Q9Y6Q2 735 aa18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 BPTFQ12830 3046 aa18.8■□□□□ 0.6
CLSTN3-214ENST00000542663 SHROOM3Q8TF72 1996 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 LRRIQ3A6PVS8 624 aaPredicted RBP18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 MDM4O15151 490 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 CYP26A1O43174 497 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 C4BPAP04003 597 aaKnown RBP18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 CASP1P29466 404 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 CLDN10P78369 228 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 BNC1Q01954 994 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 BIRC3Q13489 604 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 NCOA4Q13772 614 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 BMT2Q1RMZ1 405 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 CRYBG2Q8N1P7 616 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 ZCCHC9Q8N567 271 aaKnown RBP18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 C12orf29Q8N999 325 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 PARD3BQ8TEW8 1205 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 GPR174Q9BXC1 333 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 ZDHHC5Q9C0B5 715 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 CUEDC2Q9H467 287 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 CCDC86Q9H6F5 360 aaKnown RBP18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 PRDM16Q9HAZ2 1276 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 NMUR1Q9HB89 426 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 FAM49BQ9NUQ9 324 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 LSM7Q9UK45 103 aaKnown RBP18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 NUDT5Q9UKK9 219 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 SCML2Q9UQR0 700 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 NFE2L3Q9Y4A8 694 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 PLXNA2O75051 1894 aa18.79■□□□□ 0.6
CLSTN3-214ENST00000542663 A0A1B0GTW7 788 aa18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 NCAM1P13591 858 aa18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 ACO1P21399 889 aaKnown RBP18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 NDST1P52848 882 aa18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 ENPP2Q13822 863 aa18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 CLEC20AQ6ZU45 233 aa18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 LINC00301Q8NCQ3 95 aa18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 BAHD1Q8TBE0 780 aaPredicted RBP18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 DHX58Q96C10 678 aa18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 C7orf25Q9BPX7 421 aa18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 ITM2CQ9NQX7 267 aa18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.78■□□□□ 0.6
CLSTN3-214ENST00000542663 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms