RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 RSPH3Q86UC2 560 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 CHSY1Q86X52 802 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 ADGRF2Q8IZF7 708 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 DCAKDQ8WVC6 231 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 NTAN1Q96AB6 310 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 MTBPQ96DY7 904 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 PPP1R10Q96QC0 940 aaKnown RBP10.24□□□□□ -0.77
SS18-205ENST00000542420 PPP1R16BQ96T49 567 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 PAFAH2Q99487 392 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 BRD8Q9H0E9 1235 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 RXFP1Q9HBX9 757 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 KLHL14Q9P2G3 628 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 STAP1Q9ULZ2 295 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 PTCH2Q9Y6C5 1203 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 TDRD15B5MCY1 1934 aaKnown RBP10.24□□□□□ -0.77
SS18-205ENST00000542420 PTPRDP23468 1912 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 PPEF2O14830 753 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 CYP2F1P24903 491 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 CNTFP26441 200 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 IFNAR2P48551 515 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 LHX1P48742 406 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 WDR4P57081 412 aaKnown RBP10.24□□□□□ -0.77
SS18-205ENST00000542420 BASP1P80723 227 aaKnown RBP10.24□□□□□ -0.77
SS18-205ENST00000542420 SEMA5AQ13591 1074 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 TAF5Q15542 800 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 C17orf99Q6UX52 265 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 ANKRD42Q8N9B4 389 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 FBF1Q8TES7 1133 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 DNAJB3Q8WWF6 145 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 PGAP3Q96FM1 320 aaPredicted RBP10.24□□□□□ -0.77
SS18-205ENST00000542420 OLFM3Q96PB7 478 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 SLC2A13Q96QE2 648 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 UPF3AQ9H1J1 476 aaKnown RBP10.24□□□□□ -0.77
SS18-205ENST00000542420 ZNF408Q9H9D4 720 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 ETNK2Q9NVF9 386 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 AP4E1Q9UPM8 1137 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 IPPQ9Y573 584 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 TRPV2Q9Y5S1 764 aa10.24□□□□□ -0.77
SS18-205ENST00000542420 POC1B-GALNT4F8VUJ3 575 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 M0QZ92 97 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 HNRNPCL1O60812 293 aaKnown RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 DUSP11O75319 330 aaKnown RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 GABBR2O75899 941 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 DGKIO75912 1065 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 AKR1A1P14550 325 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 CREB1P16220 341 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 NPR3P17342 541 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 RPL9P32969 192 aaKnown RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 ARL4AP40617 200 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 HCAR3P49019 387 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 RGS7P49802 495 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 SERPINB9P50453 376 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 ZNF200P98182 395 aaPredicted RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 MMRN1Q13201 1228 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 DNAJC3Q13217 504 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 PKN2Q16513 984 aaKnown RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 INTS6LQ5JSJ4 861 aaKnown RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 VPS52Q8N1B4 723 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 B3GALNT2Q8NCR0 500 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 SMG8Q8ND04 991 aaKnown RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 PIWIL1Q96J94 861 aaKnown RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 WDR83Q9BRX9 315 aaKnown RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 NAT9Q9BTE0 207 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 TRIM62Q9BVG3 475 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 CDHR5Q9HBB8 845 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 FAM49BQ9NUQ9 324 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 FGFR1OP2Q9NVK5 253 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 SAE1Q9UBE0 346 aaPredicted RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 TBK1Q9UHD2 729 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 FZD10Q9ULW2 581 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 USP3Q9Y6I4 520 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 FNDC1Q4ZHG4 1894 aaPredicted RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 H3BRJ5 948 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 DNM1LO00429 736 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 KCNN4O15554 427 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 EDF1O60869 148 aaKnown RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 STK10O94804 968 aaKnown RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 CELF2O95319 508 aaKnown RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 FGFR1P11362 822 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 GLUD2P49448 558 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 RAB27AP51159 221 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 LILRA4P59901 499 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 MRPS5P82675 430 aaKnown RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 MRPS6P82932 125 aaKnown RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 PURAQ00577 322 aaKnown RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 CDK18Q07002 472 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 SCAPQ12770 1279 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 GRIK3Q13003 919 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 RIPK1Q13546 671 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 BBS9Q3SYG4 887 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 MSS51Q4VC12 460 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 HHATQ5VTY9 493 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 PDZD4Q76G19 769 aaPredicted RBP10.23□□□□□ -0.77
SS18-205ENST00000542420 BEND5Q7L4P6 421 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 SLC26A11Q86WA9 606 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 TRIM42Q8IWZ5 723 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 BANPQ8N9N5 519 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 RAB3IL1Q8TBN0 382 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 LRRC8CQ8TDW0 803 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 MTG1Q9BT17 334 aaPredicted RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms