RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 PTENP60484 403 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 GRM1Q13255 1194 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 E2F2Q14209 437 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 SEZ6Q53EL9 994 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 ZNF484Q5JVG2 852 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 SNX30Q5VWJ9 437 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 EFCAB12Q6NXP0 572 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 NEK5Q6P3R8 708 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 ZNF365Q70YC5 407 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 OR5B17Q8NGF7 314 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 RFFLQ8WZ73 363 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 PAWRQ96IZ0 340 aaKnown RBP8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 PRPF18Q99633 342 aaKnown RBP8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 TINF2Q9BSI4 451 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 TBC1D10AQ9BXI6 508 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 MRPL4Q9BYD3 311 aaKnown RBP8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 CARD9Q9H257 536 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 CCDC134Q9H6E4 229 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 OSGEPQ9NPF4 335 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 CASS4Q9NQ75 786 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 POLG2Q9UHN1 485 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 ATPIF1Q9UII2 106 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 COG5Q9UP83 839 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 LRCH1Q9Y2L9 728 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 COL1A2P08123 1366 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 AP3B1O00203 1094 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 O00370 1275 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 B4GALT5O43286 388 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 KPNA6O60684 536 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 ACSL3O95573 720 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 GSTA2P09210 222 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 NUDT17P0C025 328 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 COL6A1P12109 1028 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 CCNB1P14635 433 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 ACO1P21399 889 aaKnown RBP8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 TNFAIP3P21580 790 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 PSMA3P25788 255 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 ACADSBP45954 432 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 PDE1BQ01064 536 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 AUHQ13825 339 aaKnown RBP8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 PLEKHG6Q3KR16 790 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 DUSP28Q4G0W2 176 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 MARCH8Q5T0T0 291 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 BEND5Q7L4P6 421 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 RHPN2Q8IUC4 686 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 LSMEM2Q8N112 164 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 ABTB1Q969K4 478 aaPredicted RBP8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 ZNF333Q96JL9 665 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 ERP44Q9BS26 406 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 PITPNM3Q9BZ71 974 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 THAP2Q9H0W7 228 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 C2orf40Q9H1Z8 148 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 STOML1Q9UBI4 398 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 EVLQ9UI08 416 aaPredicted RBP8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 CPSF3Q9UKF6 684 aaKnown RBP8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 SATB2Q9UPW6 733 aa8.3□□□□□ -1.08
PDLIM5-221ENST00000542407 CES2O00748 559 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 CLDN3O15551 220 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 ACSL4O60488 711 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 APOEP02649 317 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 MMP3P08254 477 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 CYP11B1P15538 503 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 VHLP40337 213 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 HADHBP55084 474 aaKnown RBP8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 DSTNP60981 165 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 BASP1P80723 227 aaKnown RBP8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 POU5F1BQ06416 359 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 ACVR2BQ13705 512 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 TRIM71Q2Q1W2 868 aaKnown RBP8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 CNPY1Q3B7I2 92 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 KHDC1Q4VXA5 237 aaKnown RBP8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 ENOSF1Q7L5Y1 443 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 AGGF1Q8N302 714 aaeCLIP8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 UBR7Q8N806 425 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 SLC35G2Q8TBE7 412 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 DPF3Q92784 378 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 FAM136AQ96C01 138 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 RBM14Q96PK6 669 aaKnown RBP8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 LRRC37BQ96QE4 947 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 ALPK1Q96QP1 1244 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 FERD3LQ96RJ6 166 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 MTMR12Q9C0I1 747 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 FLRT1Q9NZU1 646 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 CPA4Q9UI42 421 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 CHMP2BQ9UQN3 213 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 TSC22D4Q9Y3Q8 395 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 MGAMO43451 1857 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 TNFRSF10AO00220 468 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 ACKR2O00590 384 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 SEC24DO94855 1032 aaPredicted RBP8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 HUNKP57058 714 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 TUBA4AP68366 448 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 MAPK6Q16659 721 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 FAM187BQ17R55 369 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 C15orf59Q2T9L4 293 aaPredicted RBP8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 C6orf183Q5T699 404 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 SPOPLQ6IQ16 392 aa8.29□□□□□ -1.08
PDLIM5-221ENST00000542407 RFX8Q6ZV50 586 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms