RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 ZP2Q05996 745 aa18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 SPA17Q15506 151 aa18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 CCDC122Q5T0U0 273 aa18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 FAM102AQ5T9C2 384 aaPredicted RBP18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 CC2D1AQ6P1N0 951 aaPredicted RBP18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 MSANTD2Q6P1R3 559 aa18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 OLFML1Q6UWY5 402 aa18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 MMS22LQ6ZRQ5 1243 aa18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 MON1BQ7L1V2 547 aa18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 SCD5Q86SK9 330 aa18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 XYLT1Q86Y38 959 aa18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 OTUB2Q96DC9 234 aa18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 CALR3Q96L12 384 aaKnown RBP18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 SELENOOQ9BVL4 669 aa18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 TBC1D14Q9P2M4 693 aa18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 LSM7Q9UK45 103 aaKnown RBP18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 INTUQ9ULD6 942 aa18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 HBS1LQ9Y450 684 aaKnown RBP18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 NOTCH4Q99466 2003 aa18.32■□□□□ 0.52
CLSTN3-210ENST00000540931 DENND4CQ5VZ89 1909 aa18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 C2CD4DB7Z1M9 353 aa18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 COCHO43405 550 aa18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 DAB1O75553 588 aa18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 ERBB2P04626 1255 aa18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 KRT3P12035 628 aa18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 MATKP42679 507 aa18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 FAM78AQ5JUQ0 283 aa18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 FAM183BPQ6ZVS7 135 aa18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 MFSD6LQ8IWD5 586 aa18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 UNC45BQ8IWX7 931 aa18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 YAF2Q8IY57 180 aa18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 ARL14EPQ8N8R7 260 aaPredicted RBP18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 SPC24Q8NBT2 197 aa18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 BAG1Q99933 345 aaPredicted RBP18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 C11orf70Q9BRQ4 267 aa18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 MARCH2Q9P0N8 246 aa18.31■□□□□ 0.52
CLSTN3-210ENST00000540931 E2F8A0AVK6 867 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 C2orf78A6NCI8 922 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 SIGLEC16A6NMB1 481 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 DCXO43602 365 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 GJA1P17302 382 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 PSMC3P17980 439 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 RING1Q06587 406 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 ASTE1Q2TB18 679 aaPredicted RBP18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 ARHGAP29Q52LW3 1261 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 DNAJC24Q6P3W2 148 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 SND1Q7KZF4 910 aaKnown RBP eCLIP18.3■□□□□ 0.529e-8■■■■□ 26.2
CLSTN3-210ENST00000540931 BHLHA9Q7RTU4 235 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 BPIFB1Q8TDL5 484 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 CTNNBL1Q8WYA6 563 aaPredicted RBP18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 PLD4Q96BZ4 506 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 SLC2A13Q96QE2 648 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 IRX2Q9BZI1 471 aaPredicted RBP18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 CCSER2Q9H7U1 834 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 NMUR1Q9HB89 426 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 SLC12A6Q9UHW9 1150 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 MYO16Q9Y6X6 1858 aa18.3■□□□□ 0.52
CLSTN3-210ENST00000540931 A0A087X0T9 212 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 GABBR2O75899 941 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 LATS1O95835 1130 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 H2AFZP0C0S5 128 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 FAM228BP0C875 321 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 HARS2P49590 506 aaKnown RBP18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 GPC5P78333 572 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 KRT83P78385 493 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 PFKPQ01813 784 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 HTR4Q13639 388 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 NUGGCQ68CJ6 796 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 DCUN1D2Q6PH85 259 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 H2AFVQ71UI9 128 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 EXOC4Q96A65 974 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 SMOC2Q9H3U7 446 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 CDH22Q9UJ99 828 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 SH3BP1Q9Y3L3 701 aa18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 NUP210Q8TEM1 1887 aaPredicted RBP18.29■□□□□ 0.52
CLSTN3-210ENST00000540931 ANAPC1Q9H1A4 1944 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 EIF3CLB5ME19 914 aaKnown RBP18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 PIK3R2O00459 728 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 LCA5LO95447 670 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 PLEKP08567 350 aaPredicted RBP18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 SDC4P31431 198 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 AMPD2Q01433 879 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 FCHO2Q0JRZ9 810 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 EFEMP1Q12805 493 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 PTP4A2Q12974 167 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 TDGQ13569 410 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 ACAP1Q15027 740 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 SLC25A52Q3SY17 297 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 DCAF6Q58WW2 860 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 PLEKHA7Q6IQ23 1121 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 C1orf228Q6PIY5 440 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 UBALD2Q8IYN6 164 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 FNIP1Q8TF40 1166 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 IRF7Q92985 503 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 USP13Q92995 863 aaPredicted RBP18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 AZIN2Q96A70 460 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 ZNF653Q96CK0 615 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 PGAP3Q96FM1 320 aaPredicted RBP18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 ZSWIM3Q96MP5 696 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms