RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 TRABDQ9H4I3 376 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 SMYD3Q9H7B4 428 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 WASH6PQ9NQA3 447 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 STMN3Q9NZ72 180 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 AMFRQ9UKV5 643 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 GNEQ9Y223 722 aaKnown RBP9.79□□□□□ -0.84
CLIP1-214ENST00000540539 TRAF6Q9Y4K3 522 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 TACC3Q9Y6A5 838 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 SLC4A4Q9Y6R1 1079 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 LRP5O75197 1615 aa9.79□□□□□ -0.84
CLIP1-214ENST00000540539 ARHGAP42A6NI28 874 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 OR5K4A6NMS3 321 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 MEI4A8MW99 385 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 DYNC1LI2O43237 492 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-214ENST00000540539 THAP12O43422 761 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 RFC1P35251 1148 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-214ENST00000540539 PTGER2P43116 358 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 PTPN9P43378 593 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 PHKA1P46020 1223 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 SLC26A2P50443 739 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 ARL4CP56559 192 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 MCCD1P59942 119 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-214ENST00000540539 GALK2Q01415 458 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 DLGAP5Q15398 846 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 NAALADL2Q58DX5 795 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 SLX4IPQ5VYV7 408 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 BTLAQ7Z6A9 289 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 ZFPM1Q8IX07 1006 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 BEND7Q8N7W2 519 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-214ENST00000540539 TTC13Q8NBP0 860 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 NLRP7Q8WX94 980 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 SLC7A3Q8WY07 619 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 CCDC124Q96CT7 223 aaKnown RBP9.78□□□□□ -0.84
CLIP1-214ENST00000540539 SHISA4Q96DD7 197 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 SERHL2Q9H4I8 314 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 NINJ2Q9NZG7 142 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 KLQ9UEF7 1012 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 MAFFQ9ULX9 164 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 ARHGAP26Q9UNA1 814 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 SSUH2Q9Y2M2 353 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 PCDHB4Q9Y5E5 795 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 ST14Q9Y5Y6 855 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-214ENST00000540539 H0YIN7 160 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 SOCS7O14512 581 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 ATP2A1O14983 1001 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 HDAC3O15379 428 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 H6PDO95479 791 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 DLDP09622 509 aaKnown RBP9.78□□□□□ -0.84
CLIP1-214ENST00000540539 CALM1P0DP23 149 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 CALM2P0DP24 149 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 CALM3P0DP25 149 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 KRT10P13645 584 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 NPR1P16066 1061 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 GNL1P36915 607 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-214ENST00000540539 STAT3P40763 770 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 SLC26A3P40879 764 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 FKBP4Q02790 459 aaKnown RBP eCLIP9.78□□□□□ -0.84
CLIP1-214ENST00000540539 PRKCQQ04759 706 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 GRAPQ13588 217 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 INAVAQ3KP66 663 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 LRIT3Q3SXY7 679 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 ZNF618Q5T7W0 954 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 AADACL2Q6P093 401 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 GALNT18Q6P9A2 607 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 CYFIP1Q7L576 1253 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 KCTD20Q7Z5Y7 419 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 TRIM22Q8IYM9 498 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 PQLC1Q8N2U9 271 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 GRAPLQ8TC17 118 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-214ENST00000540539 SCUBE2Q9NQ36 999 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 RIMKLBQ9ULI2 386 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 SMG5Q9UPR3 1016 aaKnown RBP9.78□□□□□ -0.84
CLIP1-214ENST00000540539 PTPN22Q9Y2R2 807 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 RNF11Q9Y3C5 154 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 KIF13BQ9NQT8 1826 aa9.78□□□□□ -0.84
CLIP1-214ENST00000540539 TK2O00142 265 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 GIPC1O14908 333 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 ZW10O43264 779 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 CCNT2O60583 730 aaKnown RBP9.77□□□□□ -0.84
CLIP1-214ENST00000540539 NELFEP18615 380 aaKnown RBP9.77□□□□□ -0.84
CLIP1-214ENST00000540539 EVI2BP34910 448 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 CPOXP36551 454 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 HPCAL1P37235 193 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 CDH15P55291 814 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 ZBED5Q49AG3 693 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 METTL24Q5JXM2 366 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 SHEQ5VZ18 495 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 CCDC137Q6PK04 289 aaKnown RBP9.77□□□□□ -0.84
CLIP1-214ENST00000540539 LYPD8Q6UX82 237 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 AGMOQ6ZNB7 445 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 ADAMTSL2Q86TH1 951 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 AKAP14Q86UN6 197 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 ZDHHC14Q8IZN3 488 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 TRIB2Q92519 343 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 DCPSQ96C86 337 aaKnown RBP9.77□□□□□ -0.84
CLIP1-214ENST00000540539 MASTLQ96GX5 879 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 UROC1Q96N76 676 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 TBCBQ99426 244 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 TARS2Q9BW92 718 aaKnown RBP9.77□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms