RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 H3BSA7 217 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 KCNN4O15554 427 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 TSHRP16473 764 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 LPIN1Q14693 890 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 BBS12Q6ZW61 710 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 METTL25Q8N6Q8 603 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 SERPINI1Q99574 410 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 TBC1D30Q9Y2I9 924 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 SH3GLB1Q9Y371 365 aa13.29□□□□□ -0.28
SFSWAP-209ENST00000540469 PLSCR1O15162 318 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 ITM2AO43736 263 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 SF3B1O75533 1304 aaKnown RBP eCLIP13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 ATP5BP06576 529 aaKnown RBP13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 EIF2AK2P19525 551 aaKnown RBP13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 PRR5LQ6MZQ0 368 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 FAM196AQ6ZSG2 479 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 ARMCX6Q7L4S7 300 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 ACTRT2Q8TDY3 377 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 CHURC1Q8WUH1 139 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 GFM2Q969S9 779 aaKnown RBP13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 LIN28AQ9H9Z2 209 aaKnown RBP13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 PNPOQ9NVS9 261 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 RBAKQ9NYW8 714 aaPredicted RBP13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 UBAP1Q9NZ09 502 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 ITGA11Q9UKX5 1188 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 TESPA1A2RU30 521 aaPredicted RBP13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 KDELR1P24390 212 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 TBXAS1P24557 533 aaPredicted RBP13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 PCSK6P29122 969 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 RFC1P35251 1148 aaPredicted RBP13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 IGBP1P78318 339 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 GK3PQ14409 553 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 C16orf72Q14CZ0 275 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 ZACNQ401N2 412 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 FSCBQ5H9T9 825 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 CES4AQ5XG92 561 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 KRT80Q6KB66 452 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 SLC39A4Q6P5W5 647 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 FRMD7Q6ZUT3 714 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 DPH6Q7L8W6 267 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 GAB3Q8WWW8 586 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 APOBEC3GQ9HC16 384 aaKnown RBP13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 MAN1C1Q9NR34 630 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 PSMD13Q9UNM6 376 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 GNEQ9Y223 722 aaKnown RBP13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 PPME1Q9Y570 386 aa13.28□□□□□ -0.28
SFSWAP-209ENST00000540469 PEX1O43933 1283 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 DNAJA2O60884 412 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 DGKIO75912 1065 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 BBOX1O75936 387 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 NELFEP18615 380 aaKnown RBP13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 ITGAXP20702 1163 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 SERPINB5P36952 375 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 NR1H2P55055 460 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 PDK1Q15118 436 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 TEX44Q53QW1 395 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 LPCAT2Q7L5N7 544 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 LDHDQ86WU2 507 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 CSRNP1Q96S65 589 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 ST6GALNAC4Q9H4F1 302 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 AGO2Q9UKV8 859 aaKnown RBP13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 CCPG1Q9ULG6 757 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 TEX264Q9Y6I9 313 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 RBM47A0AV96 593 aaKnown RBP13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 ZBED1O96006 694 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 NLRP11P59045 1033 aaKnown RBP13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 SEZ6Q53EL9 994 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 PPP6R3Q5H9R7 873 aaPredicted RBP13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 N4BP2L1Q5TBK1 243 aaPredicted RBP13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 BSPRYQ5W0U4 402 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 MARVELD2Q8N4S9 558 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 CATSPER1Q8NEC5 780 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 BSNDQ8WZ55 320 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 ERLEC1Q96DZ1 483 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 HAUS8Q9BT25 410 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 KLC2Q9H0B6 622 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 CAAP1Q9H8G2 361 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 C6orf203Q9P0P8 240 aaPredicted RBP13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 TXNDC16Q9P2K2 825 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 PCDHGB4Q9UN71 923 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 NUB1Q9Y5A7 615 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 PCDHGB5Q9Y5G0 923 aa13.27□□□□□ -0.28
SFSWAP-209ENST00000540469 F5H423 210 aaPredicted RBP13.27□□□□□ -0.29
SFSWAP-209ENST00000540469 BOLA2-SMG1P6H3BVE0 249 aa13.27□□□□□ -0.29
SFSWAP-209ENST00000540469 RFPL1O75677 317 aa13.27□□□□□ -0.29
SFSWAP-209ENST00000540469 CSH1P0DML2 217 aa13.27□□□□□ -0.29
SFSWAP-209ENST00000540469 CSH2P0DML3 217 aa13.27□□□□□ -0.29
SFSWAP-209ENST00000540469 TCN1P20061 433 aaPredicted RBP13.27□□□□□ -0.29
SFSWAP-209ENST00000540469 POLR2BP30876 1174 aaKnown RBP13.27□□□□□ -0.29
SFSWAP-209ENST00000540469 CDH6P55285 790 aa13.27□□□□□ -0.29
SFSWAP-209ENST00000540469 PSMC1P62191 440 aaKnown RBP13.27□□□□□ -0.29
SFSWAP-209ENST00000540469 GRAMD4Q6IC98 578 aa13.27□□□□□ -0.29
SFSWAP-209ENST00000540469 IL31RAQ8NI17 732 aa13.27□□□□□ -0.29
SFSWAP-209ENST00000540469 ACER1Q8TDN7 264 aa13.27□□□□□ -0.29
SFSWAP-209ENST00000540469 TCHPQ9BT92 498 aa13.27□□□□□ -0.29
SFSWAP-209ENST00000540469 COL14A1Q05707 1796 aaKnown RBP13.27□□□□□ -0.29
SFSWAP-209ENST00000540469 ZNFX1Q9P2E3 1918 aaKnown RBP13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 ASTN2O75129 1339 aaPredicted RBP13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 ENO3P13929 434 aaPredicted RBP13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 YWHAZP63104 245 aaKnown RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms