RNA–Protein interactions for RNA: ENST00000539533.3

PCDHB17P-201, Transcript of protocadherin beta 17 pseudogene, humanhuman

BASIC

Gene PCDHB17P, Length 2,393 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB17P-201ENST00000539533 TMLHEQ9NVH6 421 aa17.8■□□□□ 0.44
PCDHB17P-201ENST00000539533 HCSTQ9UBK5 93 aa17.8■□□□□ 0.44
PCDHB17P-201ENST00000539533 MTRF1LQ9UGC7 380 aaKnown RBP17.8■□□□□ 0.44
PCDHB17P-201ENST00000539533 DSEQ9UL01 958 aa17.8■□□□□ 0.44
PCDHB17P-201ENST00000539533 CETN2P41208 172 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 CDKN2BP42772 138 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 SATB1Q01826 763 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 ADCY1Q08828 1119 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 INTS6LQ5JSJ4 861 aaKnown RBP17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 FAM171BQ6P995 826 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 CROCCP2Q86T23 111 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 FAM172AQ8WUF8 416 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 HSPH1Q92598 858 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 APBB2Q92870 758 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 TMEM109Q9BVC6 243 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 ADAM33Q9BZ11 813 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 DCLK3Q9C098 648 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 CCDC134Q9H6E4 229 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 LRFN2Q9ULH4 789 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 hCG_1818297A0A087WSY0 165 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 DPYSL4O14531 572 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 PAX7P23759 505 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 KDELR1P24390 212 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 CLNS1AP54105 237 aaKnown RBP17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 ELF3P78545 371 aaPredicted RBP17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 TFDP3Q5H9I0 405 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 CYP4V2Q6ZWL3 525 aaPredicted RBP17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 UHMK1Q8TAS1 419 aaKnown RBP17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 EPS8L3Q8TE67 593 aaKnown RBP17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 KCTD13Q8WZ19 329 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 TOX2Q96NM4 488 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 PRMT1Q99873 361 aaKnown RBP17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 NRDE2Q9H7Z3 1164 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 LRRC4Q9HBW1 653 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 SLC12A4Q9UP95 1085 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 ATP11BQ9Y2G3 1177 aa17.79■□□□□ 0.44
PCDHB17P-201ENST00000539533 GSTA1P08263 222 aa17.78■□□□□ 0.44
PCDHB17P-201ENST00000539533 PAX3P23760 479 aa17.78■□□□□ 0.44
PCDHB17P-201ENST00000539533 BCAR1P56945 870 aa17.78■□□□□ 0.44
PCDHB17P-201ENST00000539533 COPS2P61201 443 aa17.78■□□□□ 0.44
PCDHB17P-201ENST00000539533 SF3A3Q12874 501 aaKnown RBP eCLIP17.78■□□□□ 0.44
PCDHB17P-201ENST00000539533 SCYL2Q6P3W7 929 aa17.78■□□□□ 0.44
PCDHB17P-201ENST00000539533 GPRIN1Q7Z2K8 1008 aa17.78■□□□□ 0.44
PCDHB17P-201ENST00000539533 CTU1Q7Z7A3 348 aaKnown RBP17.78■□□□□ 0.44
PCDHB17P-201ENST00000539533 CRIPAKQ8N1N5 446 aa17.78■□□□□ 0.44
PCDHB17P-201ENST00000539533 SPATA18Q8TC71 538 aa17.78■□□□□ 0.44
PCDHB17P-201ENST00000539533 PKMYT1Q99640 499 aa17.78■□□□□ 0.44
PCDHB17P-201ENST00000539533 SAMD15Q9P1V8 674 aa17.78■□□□□ 0.44
PCDHB17P-201ENST00000539533 TTC3P53804 2025 aa17.78■□□□□ 0.44
PCDHB17P-201ENST00000539533 NEBLO76041 1014 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 CXCL10P02778 98 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 BDNFP23560 247 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 SLCO1A2P46721 670 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 TKTL1P51854 596 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 YWHAHQ04917 246 aaPredicted RBP17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 CRYMQ14894 314 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 THEM5Q8N1Q8 247 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 DNAJC5GQ8N7S2 189 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 KCTD6Q8NC69 237 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 CMASQ8NFW8 434 aaPredicted RBP17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 FAM149B1Q96BN6 582 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 ELAC2Q9BQ52 826 aaKnown RBP17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 STMN4Q9H169 189 aaPredicted RBP17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 PCDHB8Q9UN66 801 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 RIPK2O43353 540 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 PRPSAP2O60256 369 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 TADA2AO75478 443 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 TJP3O95049 919 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 TYMPP19971 482 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 SLC8A1P32418 973 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 ATXN1P54253 815 aaKnown RBP17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 MRPS5P82675 430 aaKnown RBP17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 PPP1R7Q15435 360 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 HIBCHQ6NVY1 386 aaPredicted RBP17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 FBXO46Q6PJ61 603 aaPredicted RBP17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 SIX6OS1Q8N1H7 587 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 SMARCD1Q96GM5 515 aa17.77■□□□□ 0.44
PCDHB17P-201ENST00000539533 TMEM189-UBE2V1I3L0A0 370 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 NRP1O14786 923 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 VIMP08670 466 aaKnown RBP17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 SCNN1AP37088 669 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 HDAC4P56524 1084 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 SLMAPQ14BN4 828 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 TNFAIP8L3Q5GJ75 292 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 EFHC1Q5JVL4 640 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 DEFB106AQ8N104 65 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 C11orf84Q9BUA3 381 aaPredicted RBP17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 TANC1Q9C0D5 1861 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 HHLA1C9JL84 531 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 RASGRF2O14827 1237 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 ATP6V1G2O95670 118 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 OR4Q2P0C623 313 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 RARGP13631 454 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 PTPN7P35236 360 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 AUHQ13825 339 aaKnown RBP17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 CCNG2Q16589 344 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 HFE2Q6ZVN8 426 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 ARCQ7LC44 396 aa17.76■□□□□ 0.43
PCDHB17P-201ENST00000539533 HAUS1Q96CS2 278 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms