RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 C2CD2Q9Y426 696 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 CITO14578 2027 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 TRIM24O15164 1050 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 TSPAN3O60637 253 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 CSO75390 466 aaKnown RBP9.74□□□□□ -0.85
USP28-205ENST00000537706 ADRB2P07550 413 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 OR52Z1P0C646 297 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 ITGB6P18564 788 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 CCT6AP40227 531 aaKnown RBP9.74□□□□□ -0.85
USP28-205ENST00000537706 SFSWAPQ12872 951 aaKnown RBP9.74□□□□□ -0.85
USP28-205ENST00000537706 TTC31Q49AM3 519 aaPredicted RBP9.74□□□□□ -0.85
USP28-205ENST00000537706 CACUL1Q86Y37 369 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 BBS7Q8IWZ6 715 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 FBXL16Q8N461 479 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 ARL14Q8N4G2 192 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 EXTL1Q92935 676 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 JAKMIP1Q96N16 626 aaKnown RBP9.74□□□□□ -0.85
USP28-205ENST00000537706 TRIM9Q9C026 710 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 ASB7Q9H672 318 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 THAP10Q9P2Z0 257 aaPredicted RBP9.74□□□□□ -0.85
USP28-205ENST00000537706 NCKAP1Q9Y2A7 1128 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 PTPRJQ12913 1337 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 OBSL1O75147 1896 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 CYP26A1O43174 497 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 ACAT1P24752 427 aaKnown RBP9.74□□□□□ -0.85
USP28-205ENST00000537706 MLLT3P42568 568 aaPredicted RBP9.74□□□□□ -0.85
USP28-205ENST00000537706 KCNT1Q5JUK3 1230 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 PRAMEF14Q5SWL7 426 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 KIAA0895LQ68EN5 471 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 ATCAYQ86WG3 371 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 PDCL2Q8N4E4 241 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 RDH13Q8NBN7 331 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 OR2T3Q8NH03 318 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 AIFM3Q96NN9 605 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 FBRSQ9HAH7 460 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 TMPRSS4Q9NRS4 437 aa9.74□□□□□ -0.85
USP28-205ENST00000537706 ATXN7L1Q9ULK2 861 aaPredicted RBP9.74□□□□□ -0.85
USP28-205ENST00000537706 MAGEC1O60732 1142 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 DNTTP04053 509 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 EPHX1P07099 455 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 FAM87AP0C7U9 286 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 CD38P28907 300 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 ACSL1P33121 698 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 DUSP3P51452 185 aaPredicted RBP9.73□□□□□ -0.85
USP28-205ENST00000537706 ZBTB16Q05516 673 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 TAF10Q12962 218 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 C3orf38Q5JPI3 329 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 HECTD3Q5T447 861 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 CDCP2Q5VXM1 449 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 TPGS1Q6ZTW0 290 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 RASEFQ8IZ41 740 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 OVCA2Q8WZ82 227 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 WASF1Q92558 559 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 NTPCRQ9BSD7 190 aaKnown RBP9.73□□□□□ -0.85
USP28-205ENST00000537706 MSTO1Q9BUK6 570 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 MARK1Q9P0L2 795 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 DNM3Q9UQ16 869 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 R3HCC1Q9Y3T6 440 aaKnown RBP9.73□□□□□ -0.85
USP28-205ENST00000537706 SLCO1B1Q9Y6L6 691 aa9.73□□□□□ -0.85
USP28-205ENST00000537706 OPA1O60313 960 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 IRF1P10914 325 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 CPA1P15085 419 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 SCP2P22307 547 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 PSMA5P28066 241 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 NOP14P78316 857 aaKnown RBP9.72□□□□□ -0.85
USP28-205ENST00000537706 ADNPQ9H2P0 1102 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 ERVMER34-1Q9H9K5 563 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 GEMIN8Q9NWZ8 242 aaKnown RBP9.72□□□□□ -0.85
USP28-205ENST00000537706 TJP2Q9UDY2 1190 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 TPX2Q9ULW0 747 aaKnown RBP9.72□□□□□ -0.85
USP28-205ENST00000537706 SATB2Q9UPW6 733 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 A0A1W2PPC4 97 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 HNRNPDLO14979 420 aaKnown RBP9.72□□□□□ -0.85
USP28-205ENST00000537706 TRAK2O60296 914 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 RTN3O95197 1032 aaPredicted RBP9.72□□□□□ -0.85
USP28-205ENST00000537706 MAPTP10636 758 aaKnown RBP9.72□□□□□ -0.85
USP28-205ENST00000537706 PLS3P13797 630 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 BDNFP23560 247 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 RXRGP48443 463 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 COPAP53621 1224 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 USP46P62068 366 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 CYP27A1Q02318 531 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 CLN3Q13286 438 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 PROX2Q3B8N5 592 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 C8orf34Q49A92 452 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 SERPINA13PQ6UXR4 307 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 KANSL1Q7Z3B3 1105 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 NT5DC4Q86YG4 428 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 ADGRF2Q8IZF7 708 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 TMEM161BQ8NDZ6 487 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 ZNF564Q8TBZ8 553 aaPredicted RBP9.72□□□□□ -0.85
USP28-205ENST00000537706 GANCQ8TET4 914 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 FBXO32Q969P5 355 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 MYLPFQ96A32 169 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 C8orf48Q96LL4 319 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 SLC6A18Q96N87 628 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 SLC46A1Q96NT5 459 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 PKMYT1Q99640 499 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 EPN3Q9H201 632 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 ANAPC2Q9UJX6 822 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms