RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 INPP5DQ92835 1189 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 C18orf25Q96B23 403 aaPredicted RBP13.65□□□□□ -0.22
LDLR-203ENST00000535915 FAM49AQ9H0Q0 323 aaPredicted RBP13.65□□□□□ -0.22
LDLR-203ENST00000535915 DPEP3Q9H4B8 488 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 DHX35Q9H5Z1 703 aaKnown RBP13.65□□□□□ -0.22
LDLR-203ENST00000535915 PLEKHA5Q9HAU0 1116 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 POPDC2Q9HBU9 364 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 RBM47A0AV96 593 aaKnown RBP13.65□□□□□ -0.22
LDLR-203ENST00000535915 TRIM49D1C9J1S8 452 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 COPEO14579 308 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 HCRTO43612 131 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 GABBR2O75899 941 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 ETV4P43268 484 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 ATXN1P54253 815 aaKnown RBP13.65□□□□□ -0.22
LDLR-203ENST00000535915 SLC27A1Q6PCB7 646 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 CATSPER4Q7RTX7 472 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 ZDHHC17Q8IUH5 632 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 CDKL3Q8IVW4 592 aaPredicted RBP13.65□□□□□ -0.22
LDLR-203ENST00000535915 BEST2Q8NFU1 509 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 SNX27Q96L92 541 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 EIF2AQ9BY44 585 aaKnown RBP13.65□□□□□ -0.22
LDLR-203ENST00000535915 EBF2Q9HAK2 575 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 SETD4Q9NVD3 440 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 NOP53Q9NZM5 478 aaKnown RBP13.65□□□□□ -0.22
LDLR-203ENST00000535915 DERAQ9Y315 318 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 CXorf49A8MYA2 514 aaPredicted RBP13.64□□□□□ -0.23
LDLR-203ENST00000535915 KRT37O76014 449 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 RPSAP08865 295 aaKnown RBP13.64□□□□□ -0.23
LDLR-203ENST00000535915 PDGFRBP09619 1106 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 DHRS4L1P0CG22 281 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 BGNP21810 368 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 ADORA2BP29275 332 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 HOXA11P31270 313 aaPredicted RBP13.64□□□□□ -0.23
LDLR-203ENST00000535915 L1CAMP32004 1257 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 SH2D5Q6ZV89 423 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 APBB1IPQ7Z5R6 666 aaPredicted RBP13.64□□□□□ -0.23
LDLR-203ENST00000535915 CHSY1Q86X52 802 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 VPS52Q8N1B4 723 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 CCDC33Q8N5R6 958 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 SNAI1O95863 264 aaPredicted RBP13.64□□□□□ -0.23
LDLR-203ENST00000535915 MMP3P08254 477 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 LCP1P13796 627 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 CCDC130P13994 396 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 GBE1Q04446 702 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 NAIF1Q69YI7 327 aaPredicted RBP13.64□□□□□ -0.23
LDLR-203ENST00000535915 CLNKQ7Z7G1 428 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 SLC7A6OSQ96CW6 309 aaPredicted RBP13.64□□□□□ -0.23
LDLR-203ENST00000535915 APOL6Q9BWW8 343 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 MAGEB5Q9BZ81 275 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 TRIM6Q9C030 488 aaPredicted RBP13.64□□□□□ -0.23
LDLR-203ENST00000535915 KATNBL1Q9H079 304 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 MAD1L1Q9Y6D9 718 aa13.64□□□□□ -0.23
LDLR-203ENST00000535915 SLC15A5A6NIM6 579 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 TRDMT1O14717 391 aaKnown RBP13.63□□□□□ -0.23
LDLR-203ENST00000535915 METTL18O95568 372 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 C1QAP02745 245 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 SNRPAP09012 282 aaKnown RBP13.63□□□□□ -0.23
LDLR-203ENST00000535915 CLNS1AP54105 237 aaKnown RBP13.63□□□□□ -0.23
LDLR-203ENST00000535915 SOWAHAQ2M3V2 549 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 LGSNQ5TDP6 509 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 UNC93AQ86WB7 457 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 LRRC52Q8N7C0 313 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 STK32AQ8WU08 396 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 SRPK1Q96SB4 655 aaKnown RBP13.63□□□□□ -0.23
LDLR-203ENST00000535915 TBC1D10AQ9BXI6 508 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 GCOM2Q9BZD3 368 aaPredicted RBP13.63□□□□□ -0.23
LDLR-203ENST00000535915 KANSL3Q9P2N6 904 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 AP4E1Q9UPM8 1137 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 APOEP02649 317 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 SMPD1P17405 629 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 MAGEA6P43360 314 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 PTPN9P43378 593 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 ARFIP2P53365 341 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 BST2Q10589 180 aaKnown RBP13.63□□□□□ -0.23
LDLR-203ENST00000535915 SLC10A2Q12908 348 aaPredicted RBP13.63□□□□□ -0.23
LDLR-203ENST00000535915 CBLBQ13191 982 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 CRYMQ14894 314 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 PRKD1Q15139 912 aaPredicted RBP13.63□□□□□ -0.23
LDLR-203ENST00000535915 ZBTB6Q15916 424 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 DPYSL2Q16555 572 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 SPDYAQ5MJ70 313 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 C9orf57Q5W0N0 161 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 DPP9Q86TI2 863 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 LONP2Q86WA8 852 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 OR6J1Q8NGC5 347 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 RNF217Q8TC41 542 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 PPP1R13LQ8WUF5 828 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 NSMCE1Q8WV22 266 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 SLC10A4Q96EP9 437 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 HEY2Q9UBP5 337 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 ZNF180Q9UJW8 692 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 C15orf41Q9Y2V0 281 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 NUMBLQ9Y6R0 609 aa13.63□□□□□ -0.23
LDLR-203ENST00000535915 TRIP12Q14669 1992 aaPredicted RBP13.62□□□□□ -0.23
LDLR-203ENST00000535915 KIF3CO14782 793 aa13.62□□□□□ -0.23
LDLR-203ENST00000535915 ZFXP17010 805 aaPredicted RBP13.62□□□□□ -0.23
LDLR-203ENST00000535915 PRKCHP24723 683 aa13.62□□□□□ -0.23
LDLR-203ENST00000535915 EPHB2P29323 1055 aa13.62□□□□□ -0.23
LDLR-203ENST00000535915 SERPINB4P48594 390 aa13.62□□□□□ -0.23
LDLR-203ENST00000535915 BCAT1P54687 386 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms