RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 DBHP09172 617 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 VIL1P09327 827 aaKnown RBP6.95□□□□□ -1.3
USP28-202ENST00000535607 GLI4P10075 376 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 RARGP13631 454 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 JUNBP17275 347 aaPredicted RBP6.95□□□□□ -1.3
USP28-202ENST00000535607 RPL13P26373 211 aaKnown RBP6.95□□□□□ -1.3
USP28-202ENST00000535607 PRDX5P30044 214 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 ECHS1P30084 290 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 STX2P32856 288 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 DNA2P51530 1060 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 ERVFRD-1P60508 538 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 MRPS25P82663 173 aaKnown RBP6.95□□□□□ -1.3
USP28-202ENST00000535607 MECOMQ03112 1051 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 STK4Q13043 487 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 PDIA5Q14554 519 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 SLC9A5Q14940 896 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 CNGA2Q16280 664 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 IL17AQ16552 155 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 GSTA3Q16772 222 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 EARS2Q5JPH6 523 aaKnown RBP6.95□□□□□ -1.3
USP28-202ENST00000535607 DACT2Q5SW24 774 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 CYP4F22Q6NT55 531 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 PKN3Q6P5Z2 889 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 ZC3H14Q6PJT7 736 aaKnown RBP6.95□□□□□ -1.3
USP28-202ENST00000535607 SYDE1Q6ZW31 735 aaPredicted RBP6.95□□□□□ -1.3
USP28-202ENST00000535607 ZNF365Q70YC5 407 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 MILR1Q7Z6M3 343 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 SLFN11Q7Z7L1 901 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 DGKHQ86XP1 1220 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 KIF18BQ86Y91 864 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 PASD1Q8IV76 773 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 ANKRD35Q8N283 1001 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 SRBD1Q8N5C6 995 aaKnown RBP6.95□□□□□ -1.3
USP28-202ENST00000535607 ENDOVQ8N8Q3 282 aaKnown RBP6.95□□□□□ -1.3
USP28-202ENST00000535607 AGBL3Q8NEM8 1001 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 FAM81AQ8TBF8 368 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 DNAJC9Q8WXX5 260 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 LARP4BQ92615 738 aaKnown RBP6.95□□□□□ -1.3
USP28-202ENST00000535607 NSUN4Q96CB9 384 aaKnown RBP6.95□□□□□ -1.3
USP28-202ENST00000535607 MAGEB18Q96M61 343 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 GPR101Q96P66 508 aaPredicted RBP6.95□□□□□ -1.3
USP28-202ENST00000535607 GBP5Q96PP8 586 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 TTC1Q99614 292 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 MRIQ9BWK5 157 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 AP1M1Q9BXS5 423 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 TXLNGYQ9BZA5 131 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 NT5C3AQ9H0P0 336 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 LRMDAQ9H2I8 198 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 SMOC1Q9H4F8 434 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 PCIF1Q9H4Z3 704 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 AZI2Q9H6S1 392 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 DBNDD1Q9H9R9 158 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 TNFRSF12AQ9NP84 129 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 PCDH12Q9NPG4 1184 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 NLRC4Q9NPP4 1024 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 CYP39A1Q9NYL5 469 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 SMARCAL1Q9NZC9 954 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 MYOTQ9UBF9 498 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 ABCF2Q9UG63 623 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 AMACRQ9UHK6 382 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 LRCH1Q9Y2L9 728 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 SLC4A7Q9Y6M7 1214 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 LAMB1P07942 1786 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 SBF1O95248 1867 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 NAV1Q8NEY1 1877 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 COL2A1P02458 1487 aaPredicted RBP6.94□□□□□ -1.3
USP28-202ENST00000535607 A0A087X0T9 212 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 MAGEA13PA6NCF6 341 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 YDJCA8MPS7 323 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 FZD9O00144 591 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 TTI1O43156 1089 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 CALUO43852 315 aaPredicted RBP6.94□□□□□ -1.3
USP28-202ENST00000535607 PPP1R11O60927 126 aaPredicted RBP6.94□□□□□ -1.3
USP28-202ENST00000535607 PHF2O75151 1096 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 SKAP2O75563 359 aaPredicted RBP6.94□□□□□ -1.3
USP28-202ENST00000535607 UNC5CO95185 931 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 ZWINTO95229 277 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 FAM228BP0C875 321 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 SMARCA1P28370 1054 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 VHLP40337 213 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 PRKCIP41743 596 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 RNASE9P60153 205 aaKnown RBP6.94□□□□□ -1.3
USP28-202ENST00000535607 TNIP1Q15025 636 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 EDRF1Q3B7T1 1238 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 C6orf163Q5TEZ5 329 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 FYB2Q5VWT5 728 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 NUGGCQ68CJ6 796 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 DUPD1Q68J44 220 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 TRIM68Q6AZZ1 485 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 ALKBH5Q6P6C2 394 aaKnown RBP6.94□□□□□ -1.3
USP28-202ENST00000535607 TMEM154Q6P9G4 183 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 CCDC174Q6PII3 467 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 HHIPL2Q6UWX4 724 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 ASRGL1Q7L266 308 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 FRMD5Q7Z6J6 570 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 NEK8Q86SG6 692 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 RNF180Q86T96 592 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 OSTM1Q86WC4 334 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 RHOT2Q8IXI1 618 aa6.94□□□□□ -1.3
USP28-202ENST00000535607 LCORLQ8N3X6 602 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms