RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 APOL1O14791 398 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 AREL1O15033 823 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 CD63P08962 238 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 APEHP13798 732 aaKnown RBP3.28□□□□□ -1.88
CD44-238ENST00000534296 TRIM27P14373 513 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 FGFR2P21802 821 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 NTSR1P30989 418 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 SLC5A2P31639 672 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 ATICP31939 592 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 JAK3P52333 1124 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 ZNF543Q08ER8 600 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 SUPT20HL1Q3ZLR7 823 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 RRAGBQ5VZM2 374 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 FBXO38Q6PIJ6 1188 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 MRPL10Q7Z7H8 261 aaKnown RBP3.28□□□□□ -1.88
CD44-238ENST00000534296 DPP9Q86TI2 863 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 LIX1LQ8IVB5 337 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 LINC01465Q8N7H1 131 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.28□□□□□ -1.88
CD44-238ENST00000534296 CTHRC1Q96CG8 243 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 GRAMD1AQ96CP6 724 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 WDYHV1Q96HA8 205 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 SNX27Q96L92 541 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 SH2D3AQ9BRG2 576 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 QTRT1Q9BXR0 403 aaKnown RBP3.28□□□□□ -1.88
CD44-238ENST00000534296 RNF26Q9BY78 433 aaPredicted RBP3.28□□□□□ -1.88
CD44-238ENST00000534296 PDGFCQ9NRA1 345 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 SLC52A1Q9NWF4 448 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 GAR1Q9NY12 217 aaKnown RBP3.28□□□□□ -1.88
CD44-238ENST00000534296 ASIC5Q9NY37 505 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 KLHL13Q9P2N7 655 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 LPAR3Q9UBY5 353 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 SCAF8Q9UPN6 1271 aaKnown RBP3.28□□□□□ -1.88
CD44-238ENST00000534296 BTBD3Q9Y2F9 522 aa3.28□□□□□ -1.88
CD44-238ENST00000534296 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.27□□□□□ -1.89
CD44-238ENST00000534296 F8W8V4 182 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 CLIC1O00299 241 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 BCAR3O75815 825 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 TMIGD3P0DMS9 266 aaPredicted RBP3.27□□□□□ -1.89
CD44-238ENST00000534296 MATN1P21941 496 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 MMP8P22894 467 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 PIK3CBP42338 1070 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 CASP5P51878 434 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 SSBP2P81877 361 aaPredicted RBP3.27□□□□□ -1.89
CD44-238ENST00000534296 HTRA4P83105 476 aaPredicted RBP3.27□□□□□ -1.89
CD44-238ENST00000534296 HSF1Q00613 529 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 CBFBQ13951 182 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 GALEQ14376 348 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 ETFDHQ16134 617 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 FAM110CQ1W6H9 321 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 GLE1Q53GS7 698 aaKnown RBP3.27□□□□□ -1.89
CD44-238ENST00000534296 CYB5RLQ6IPT4 315 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 TLDC1Q6P9B6 456 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 SLC2A7Q6PXP3 512 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 CRTC1Q6UUV9 634 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 C1QL2Q7Z5L3 287 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 TXLNBQ8N3L3 684 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 SCARB1Q8WTV0 552 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 HMCESQ96FZ2 354 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 SLC39A13Q96H72 371 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 ZNF778Q96MU6 729 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 FCRL4Q96PJ5 515 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 POLR3GLQ9BT43 218 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 SELENOOQ9BVL4 669 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 VPS16Q9H269 839 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 TRNAU1APQ9NX07 287 aaKnown RBP3.27□□□□□ -1.89
CD44-238ENST00000534296 MYO1AQ9UBC5 1043 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 VPS51Q9UID3 782 aa3.27□□□□□ -1.89
CD44-238ENST00000534296 A0A1W2PPC4 97 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 ANO9A1A5B4 782 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 E5RJQ4 531 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 AGPSO00116 658 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 FYB1O15117 783 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 PMM2O15305 246 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 ZSCAN9O15535 394 aaPredicted RBP3.26□□□□□ -1.89
CD44-238ENST00000534296 VIPP01282 170 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 FGBP02675 491 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 TSHRP16473 764 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 DRD1P21728 446 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 ATP5F1P24539 256 aaPredicted RBP3.26□□□□□ -1.89
CD44-238ENST00000534296 MCM5P33992 734 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 GSTM5P46439 218 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 PRIM2P49643 509 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 CCT4P50991 539 aaKnown RBP3.26□□□□□ -1.89
CD44-238ENST00000534296 RPS13P62277 151 aaKnown RBP3.26□□□□□ -1.89
CD44-238ENST00000534296 GPC5P78333 572 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 ID2Q02363 134 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 BIRC2Q13490 618 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 BFSP2Q13515 415 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 CNGA3Q16281 694 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 P3H1Q32P28 736 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 ARL13BQ3SXY8 428 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 SLC9C1Q4G0N8 1177 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.26□□□□□ -1.89
CD44-238ENST00000534296 TMTC4Q5T4D3 741 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 MEX3CQ5U5Q3 659 aaKnown RBP3.26□□□□□ -1.89
CD44-238ENST00000534296 KLHDC7AQ5VTJ3 777 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 UEVLDQ8IX04 471 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 METTL25Q8N6Q8 603 aa3.26□□□□□ -1.89
CD44-238ENST00000534296 NANOGP1Q8N7R0 232 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms