RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	GRHL2	Q6ISB3	625 aa		5.51	□□□□□ -1.53
CD44-223	ENST00000526553	DCDC5	Q6ZRR9	648 aa		5.51	□□□□□ -1.53
CD44-223	ENST00000526553	NEK8	Q86SG6	692 aa		5.51	□□□□□ -1.53
CD44-223	ENST00000526553	GALNT16	Q8N428	558 aa		5.51	□□□□□ -1.53
CD44-223	ENST00000526553	ZNF398	Q8TD17	642 aa		5.51	□□□□□ -1.53
CD44-223	ENST00000526553	KAZALD1	Q96I82	304 aa		5.51	□□□□□ -1.53
CD44-223	ENST00000526553	TNIP3	Q96KP6	325 aa		5.51	□□□□□ -1.53
CD44-223	ENST00000526553	C5orf34	Q96MH7	638 aa		5.51	□□□□□ -1.53
CD44-223	ENST00000526553	CINP	Q9BW66	212 aa	Predicted RBP	5.51	□□□□□ -1.53
CD44-223	ENST00000526553	PCDHAC1	Q9H158	963 aa		5.51	□□□□□ -1.53
CD44-223	ENST00000526553	RGL1	Q9NZL6	768 aa		5.51	□□□□□ -1.53
CD44-223	ENST00000526553	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	5.51	□□□□□ -1.53
CD44-223	ENST00000526553	SETD1B	Q9UPS6	1966 aa	Known RBP	5.51	□□□□□ -1.53
CD44-223	ENST00000526553	FAM234B	A2RU67	622 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	PLIN1	O60240	522 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	CYP2D6	P10635	497 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	CDK4	P11802	303 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	ATF7	P17544	494 aa	Predicted RBP	5.5	□□□□□ -1.53
CD44-223	ENST00000526553	EEF1G	P26641	437 aa	Known RBP	5.5	□□□□□ -1.53
CD44-223	ENST00000526553	DNASE1L3	Q13609	305 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	ATP1A4	Q13733	1029 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	KCNJ12	Q14500	433 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	KCNB1	Q14721	858 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	SRSF7	Q16629	238 aa	Known RBP eCLIP	5.5	□□□□□ -1.53
CD44-223	ENST00000526553	CEP78	Q5JTW2	689 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	RAP1GAP2	Q684P5	730 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	TLDC1	Q6P9B6	456 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	VSTM1	Q6UX27	236 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	ZNF813	Q6ZN06	617 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	P3H2	Q8IVL5	708 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	DEPTOR	Q8TB45	409 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	PNISR	Q8TF01	805 aa	Known RBP	5.5	□□□□□ -1.53
CD44-223	ENST00000526553	HS6ST2	Q96MM7	605 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	CERS4	Q9HA82	394 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	TMEM8A	Q9HCN3	771 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	RXFP3	Q9NSD7	469 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	FZD4	Q9ULV1	537 aa		5.5	□□□□□ -1.53
CD44-223	ENST00000526553	ZNF804B	A4D1E1	1349 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	HNRNPDL	O14979	420 aa	Known RBP	5.49	□□□□□ -1.53
CD44-223	ENST00000526553	PRR35	P0CG20	571 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	MPG	P29372	298 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	PBX1	P40424	430 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	SSBP2	P81877	361 aa	Predicted RBP	5.49	□□□□□ -1.53
CD44-223	ENST00000526553	NSUN2	Q08J23	767 aa	Known RBP eCLIP	5.49	□□□□□ -1.53
CD44-223	ENST00000526553	CCDC15	Q0P6D6	951 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	MFSD13A	Q14CX5	517 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	MAPKAPK3	Q16644	382 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	MAP9	Q49MG5	647 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	DGKK	Q5KSL6	1271 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	FAM71D	Q8N9W8	422 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	GLIS1	Q8NBF1	620 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	SVIP	Q8NHG7	77 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	GJA10	Q969M2	543 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	ZNF566	Q969W8	418 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	HIC2	Q96JB3	615 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	SGCZ	Q96LD1	299 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	ZNF700	Q9H0M5	742 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	NECTIN3	Q9NQS3	549 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	VPS45	Q9NRW7	570 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	TM7SF3	Q9NS93	570 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	CA14	Q9ULX7	337 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	MAFF	Q9ULX9	164 aa		5.49	□□□□□ -1.53
CD44-223	ENST00000526553	WDR17	Q8IZU2	1322 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	DNAJC9-AS1	A6NH13	148 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	CLIC1	O00299	241 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	CA12	O43570	354 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	PRAMEF2	O60811	474 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	TMIGD3	P0DMS9	266 aa	Predicted RBP	5.48	□□□□□ -1.53
CD44-223	ENST00000526553	PECAM1	P16284	738 aa	Predicted RBP	5.48	□□□□□ -1.53
CD44-223	ENST00000526553	KEL	P23276	732 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	ABCG1	P45844	678 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	HSPA7	P48741	367 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	BTK	Q06187	659 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	MPEG1	Q2M385	716 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	SLC18B1	Q6NT16	456 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	FBXO38	Q6PIJ6	1188 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	YTHDF3	Q7Z739	585 aa	Known RBP	5.48	□□□□□ -1.53
CD44-223	ENST00000526553	SRL	Q86TD4	932 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	CCDC146	Q8IYE0	955 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	FAM186B	Q8IYM0	893 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	CLASRP	Q8N2M8	674 aa	Known RBP	5.48	□□□□□ -1.53
CD44-223	ENST00000526553	GRAMD1A	Q96CP6	724 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	ELAC2	Q9BQ52	826 aa	Known RBP	5.48	□□□□□ -1.53
CD44-223	ENST00000526553	NUDT22	Q9BRQ3	303 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	EFHD1	Q9BUP0	239 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	5.48	□□□□□ -1.53
CD44-223	ENST00000526553	USP29	Q9HBJ7	922 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	NRIP3	Q9NQ35	241 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	SEMA5B	Q9P283	1151 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	CEP83	Q9Y592	693 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	SPATA31A1	Q5TZJ5	1347 aa		5.48	□□□□□ -1.53
CD44-223	ENST00000526553	COL3A1	P02461	1466 aa	Predicted RBP	5.47	□□□□□ -1.53
CD44-223	ENST00000526553	PODXL	O00592	558 aa		5.47	□□□□□ -1.53
CD44-223	ENST00000526553	ZSCAN9	O15535	394 aa	Predicted RBP	5.47	□□□□□ -1.53
CD44-223	ENST00000526553	RNF8	O76064	485 aa		5.47	□□□□□ -1.53
CD44-223	ENST00000526553	VIP	P01282	170 aa		5.47	□□□□□ -1.53
CD44-223	ENST00000526553	MBP	P02686	304 aa	Predicted RBP	5.47	□□□□□ -1.53
CD44-223	ENST00000526553	YY1	P25490	414 aa		5.47	□□□□□ -1.53
CD44-223	ENST00000526553	MEX3C	Q5U5Q3	659 aa	Known RBP	5.47	□□□□□ -1.53
CD44-223	ENST00000526553	MORN5	Q5VZ52	161 aa		5.47	□□□□□ -1.53

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