RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 MINDY1Q8N5J2 469 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 TRIML1Q8N9V2 468 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 RBBP8NLQ8NC74 664 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-201ENST00000526271 KCNV2Q8TDN2 545 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 SYAP1Q96A49 352 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-201ENST00000526271 ZNF419Q96HQ0 510 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-201ENST00000526271 MRGPRX1Q96LB2 322 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 HSPA12BQ96MM6 686 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 GTPBP2Q9BX10 602 aaKnown RBP15.09■□□□□ 0.01
CPSF1-201ENST00000526271 KCTD10Q9H3F6 313 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 CUEDC2Q9H467 287 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 APOBEC3GQ9HC16 384 aaKnown RBP15.09■□□□□ 0.01
CPSF1-201ENST00000526271 FAM49BQ9NUQ9 324 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 DNAJC17Q9NVM6 304 aaKnown RBP15.09■□□□□ 0.01
CPSF1-201ENST00000526271 SH3BP1Q9Y3L3 701 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 R3HCC1Q9Y3T6 440 aaKnown RBP15.09■□□□□ 0.01
CPSF1-201ENST00000526271 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.08■□□□□ 0
CPSF1-201ENST00000526271 KCNJ18B7U540 433 aa15.08■□□□□ 0
CPSF1-201ENST00000526271 NEDD8-MDP1E9PL57 170 aa15.08■□□□□ 0
CPSF1-201ENST00000526271 POLR2DO15514 142 aaKnown RBP15.08■□□□□ 0
CPSF1-201ENST00000526271 HOXD12P35452 270 aa15.08■□□□□ 0
CPSF1-201ENST00000526271 TRPC3Q13507 836 aa15.08■□□□□ 0
CPSF1-201ENST00000526271 KNOP1Q1ED39 458 aaKnown RBP15.08■□□□□ 0
CPSF1-201ENST00000526271 ZACNQ401N2 412 aa15.08■□□□□ 0
CPSF1-201ENST00000526271 GRAMD4Q6IC98 578 aa15.08■□□□□ 0
CPSF1-201ENST00000526271 TPGS1Q6ZTW0 290 aa15.08■□□□□ 0
CPSF1-201ENST00000526271 STXBP4Q6ZWJ1 553 aa15.08■□□□□ 0
CPSF1-201ENST00000526271 HSCBQ8IWL3 235 aa15.08■□□□□ 0
CPSF1-201ENST00000526271 INTS4Q96HW7 963 aaKnown RBP15.08■□□□□ 0
CPSF1-201ENST00000526271 MED10Q9BTT4 135 aa15.08■□□□□ 0
CPSF1-201ENST00000526271 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.08■□□□□ 07e-6■■■■■ 74.5
CPSF1-201ENST00000526271 DNAAF2Q9NVR5 837 aaKnown RBP15.08■□□□□ 0
CPSF1-201ENST00000526271 PLK2Q9NYY3 685 aa15.08■□□□□ 0
CPSF1-201ENST00000526271 TMEM8BA6NDV4 472 aa15.07■□□□□ 0
CPSF1-201ENST00000526271 ARHGAP33O14559 1287 aa15.07■□□□□ 0
CPSF1-201ENST00000526271 AP5Z1O43299 807 aa15.07■□□□□ 0
CPSF1-201ENST00000526271 SH3BP5O60239 455 aa15.07■□□□□ 0
CPSF1-201ENST00000526271 EXOC3O60645 756 aa15.07■□□□□ 0
CPSF1-201ENST00000526271 ASS1P00966 412 aaKnown RBP15.07■□□□□ 0
CPSF1-201ENST00000526271 SNRPFP62306 86 aaKnown RBP15.07■□□□□ 0
CPSF1-201ENST00000526271 BIRC3Q13489 604 aa15.07■□□□□ 0
CPSF1-201ENST00000526271 ZNF667Q5HYK9 610 aa15.07■□□□□ 0
CPSF1-201ENST00000526271 BHMTQ93088 406 aa15.07■□□□□ 0
CPSF1-201ENST00000526271 MKRN2Q9H000 416 aaKnown RBP15.07■□□□□ 0
CPSF1-201ENST00000526271 ZSCAN16Q9H4T2 348 aaPredicted RBP15.07■□□□□ 0
CPSF1-201ENST00000526271 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.07■□□□□ 0
CPSF1-201ENST00000526271 COMMD8Q9NX08 183 aa15.07■□□□□ 0
CPSF1-201ENST00000526271 PCDHA7Q9UN72 937 aa15.07■□□□□ 0
CPSF1-201ENST00000526271 GCN1Q92616 2671 aaKnown RBP15.07■□□□□ 0
CPSF1-201ENST00000526271 GOLGA4Q13439 2230 aaKnown RBP15.07■□□□□ 0
CPSF1-201ENST00000526271 TP53BP1Q12888 1972 aaPredicted RBP15.06■□□□□ 0
CPSF1-201ENST00000526271 A0A1W2PQH9 124 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 ACTN4O43707 911 aaKnown RBP15.06■□□□□ 0
CPSF1-201ENST00000526271 CUTAO60888 179 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 CBFA2T3O75081 653 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 STC2O76061 302 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 YEATS4O95619 227 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 ADORA2BP29275 332 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 AFMP43652 599 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 GFPT1Q06210 699 aaPredicted RBP15.06■□□□□ 0
CPSF1-201ENST00000526271 ENPP2Q13822 863 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 PKP1Q13835 747 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 GEN1Q17RS7 908 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 FOXD4L5Q5VV16 416 aaPredicted RBP15.06■□□□□ 0
CPSF1-201ENST00000526271 FYB2Q5VWT5 728 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 SV2AQ7L0J3 742 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 CHPFQ8IZ52 775 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 PNPLA1Q8N8W4 532 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 IQUBQ8NA54 791 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 TMEM174Q8WUU8 243 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 FOXD4L4Q8WXT5 416 aaPredicted RBP15.06■□□□□ 0
CPSF1-201ENST00000526271 JAKMIP2Q96AA8 810 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 BBS2Q9BXC9 721 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 IL21RQ9HBE5 538 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 USP36Q9P275 1121 aaKnown RBP15.06■□□□□ 0
CPSF1-201ENST00000526271 SCML2Q9UQR0 700 aa15.06■□□□□ 0
CPSF1-201ENST00000526271 PVALEFA0A1B0GWK0 134 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 A0A1W2PQD8 194 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 OPHN1O60890 802 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 PHACTR2O75167 634 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 ACO1P21399 889 aaKnown RBP15.05■□□□□ -0
CPSF1-201ENST00000526271 IL12RB1P42701 662 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 INCA1Q0VD86 236 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 GRIK2Q13002 908 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 FOXD4L6Q3SYB3 417 aaPredicted RBP15.05■□□□□ -0
CPSF1-201ENST00000526271 FUT11Q495W5 492 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 RESP18Q5W5W9 173 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 BTBD8Q5XKL5 378 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 TMEM215Q68D42 235 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 LRSAM1Q6UWE0 723 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 FOXD4L3Q6VB84 417 aaPredicted RBP15.05■□□□□ -0
CPSF1-201ENST00000526271 SLC36A4Q6YBV0 504 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 SLCO6A1Q86UG4 719 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 SLC9A9Q8IVB4 645 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 C1orf216Q8TAB5 229 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 CEP76Q8TAP6 659 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 TNIP3Q96KP6 325 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 HNRNPABQ99729 332 aaKnown RBP15.05■□□□□ -0
CPSF1-201ENST00000526271 SLC32A1Q9H598 525 aa15.05■□□□□ -0
CPSF1-201ENST00000526271 TOR4AQ9NXH8 423 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms