RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SLC27A1Q6PCB7 646 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 SLC26A9Q7LBE3 791 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 ZNF467Q7Z7K2 595 aaPredicted RBP22.03■■□□□ 1.12
VPS28-205ENST00000526204 TRIM42Q8IWZ5 723 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 RFWD2Q8NHY2 731 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 CENPIQ92674 756 aaPredicted RBP22.03■■□□□ 1.12
VPS28-205ENST00000526204 TTC17Q96AE7 1141 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 MTBPQ96DY7 904 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 SNX27Q96L92 541 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 SRPK1Q96SB4 655 aaKnown RBP22.03■■□□□ 1.12
VPS28-205ENST00000526204 SLC15A5A6NIM6 579 aa22.02■■□□□ 1.12
VPS28-205ENST00000526204 CBX6O95503 412 aa22.02■■□□□ 1.12
VPS28-205ENST00000526204 APOEP02649 317 aa22.02■■□□□ 1.12
VPS28-205ENST00000526204 CYP2C8P10632 490 aa22.02■■□□□ 1.12
VPS28-205ENST00000526204 TPSB2P20231 275 aa22.02■■□□□ 1.12
VPS28-205ENST00000526204 L1CAMP32004 1257 aa22.02■■□□□ 1.12
VPS28-205ENST00000526204 ADCYAP1R1P41586 468 aa22.02■■□□□ 1.12
VPS28-205ENST00000526204 GCLCP48506 637 aaPredicted RBP22.02■■□□□ 1.12
VPS28-205ENST00000526204 SERPINB4P48594 390 aa22.02■■□□□ 1.12
VPS28-205ENST00000526204 ARFIP2P53365 341 aa22.02■■□□□ 1.12
VPS28-205ENST00000526204 TPSAB1Q15661 275 aa22.02■■□□□ 1.12
VPS28-205ENST00000526204 CTC1Q2NKJ3 1217 aa22.02■■□□□ 1.12
VPS28-205ENST00000526204 OR6B3Q8NGW1 331 aa22.02■■□□□ 1.12
VPS28-205ENST00000526204 CCDC110Q8TBZ0 833 aa22.02■■□□□ 1.12
VPS28-205ENST00000526204 NSMCE1Q8WV22 266 aa22.02■■□□□ 1.12
VPS28-205ENST00000526204 C11orf84Q9BUA3 381 aaPredicted RBP22.02■■□□□ 1.12
VPS28-205ENST00000526204 TLE6Q9H808 572 aa22.02■■□□□ 1.12
VPS28-205ENST00000526204 ALG13Q9NP73 1137 aaKnown RBP22.02■■□□□ 1.12
VPS28-205ENST00000526204 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.02■■□□□ 1.12
VPS28-205ENST00000526204 A0A0G2JND7 137 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 DNAJC6O75061 913 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 GABBR2O75899 941 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 KRT38O76015 456 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 MAGEA3P43357 314 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 FAXCQ5TGI0 409 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 ZMAT2Q96NC0 199 aaKnown RBP22.01■■□□□ 1.11
VPS28-205ENST00000526204 DNAI2Q9GZS0 605 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 MKS1Q9NXB0 559 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 SNTG2Q9NY99 539 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 KANSL3Q9P2N6 904 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 GTF2IRD1Q9UHL9 959 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 A8MXQ7 604 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 STRNO43815 780 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 HOXA11P31270 313 aaPredicted RBP22.01■■□□□ 1.11
VPS28-205ENST00000526204 BST2Q10589 180 aaKnown RBP22.01■■□□□ 1.11
VPS28-205ENST00000526204 LONP2Q86WA8 852 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 ANKRD52Q8NB46 1076 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 N4BP2L2Q92802 583 aaPredicted RBP22.01■■□□□ 1.11
VPS28-205ENST00000526204 B3GNT5Q9BYG0 378 aa22.01■■□□□ 1.11
VPS28-205ENST00000526204 GCOM2Q9BZD3 368 aaPredicted RBP22.01■■□□□ 1.11
VPS28-205ENST00000526204 XAB2Q9HCS7 855 aaKnown RBP22.01■■□□□ 1.11
VPS28-205ENST00000526204 CCNG1P51959 295 aa22■■□□□ 1.11
VPS28-205ENST00000526204 BCAT1P54687 386 aa22■■□□□ 1.11
VPS28-205ENST00000526204 PCBP1Q15365 356 aaKnown RBP eCLIP22■■□□□ 1.11
VPS28-205ENST00000526204 KIZQ2M2Z5 673 aa22■■□□□ 1.11
VPS28-205ENST00000526204 WASHC2DQ5SRD0 308 aa22■■□□□ 1.11
VPS28-205ENST00000526204 FAM13CQ8NE31 585 aa22■■□□□ 1.11
VPS28-205ENST00000526204 EBNA1BP2Q99848 306 aaKnown RBP22■■□□□ 1.11
VPS28-205ENST00000526204 KATNBL1Q9H079 304 aa22■■□□□ 1.11
VPS28-205ENST00000526204 DHX35Q9H5Z1 703 aaKnown RBP22■■□□□ 1.11
VPS28-205ENST00000526204 HEY2Q9UBP5 337 aa22■■□□□ 1.11
VPS28-205ENST00000526204 PLLPQ9Y342 182 aa22■■□□□ 1.11
VPS28-205ENST00000526204 RRN3P2A6NIE6 340 aa22■■□□□ 1.11
VPS28-205ENST00000526204 PPEF2O14830 753 aa22■■□□□ 1.11
VPS28-205ENST00000526204 CAPN15O75808 1086 aa22■■□□□ 1.11
VPS28-205ENST00000526204 HAUS5O94927 633 aa22■■□□□ 1.11
VPS28-205ENST00000526204 HOXD8P13378 290 aaPredicted RBP22■■□□□ 1.11
VPS28-205ENST00000526204 BGNP21810 368 aa22■■□□□ 1.11
VPS28-205ENST00000526204 ACADSBP45954 432 aa22■■□□□ 1.11
VPS28-205ENST00000526204 SOWAHAQ2M3V2 549 aa22■■□□□ 1.11
VPS28-205ENST00000526204 GSDMBQ8TAX9 411 aa22■■□□□ 1.11
VPS28-205ENST00000526204 ADAMTS10Q9H324 1103 aa22■■□□□ 1.11
VPS28-205ENST00000526204 TUBGCP4Q9UGJ1 667 aa22■■□□□ 1.11
VPS28-205ENST00000526204 AP4E1Q9UPM8 1137 aa22■■□□□ 1.11
VPS28-205ENST00000526204 NME7Q9Y5B8 376 aa22■■□□□ 1.11
VPS28-205ENST00000526204 PLXNA1Q9UIW2 1896 aa22■■□□□ 1.11
VPS28-205ENST00000526204 CXorf49A8MYA2 514 aaPredicted RBP21.99■■□□□ 1.11
VPS28-205ENST00000526204 CCDC22O60826 627 aa21.99■■□□□ 1.11
VPS28-205ENST00000526204 DLDP09622 509 aaKnown RBP21.99■■□□□ 1.11
VPS28-205ENST00000526204 CCNFP41002 786 aa21.99■■□□□ 1.11
VPS28-205ENST00000526204 RPL34P49207 117 aaKnown RBP21.99■■□□□ 1.11
VPS28-205ENST00000526204 SARNPP82979 210 aaKnown RBP21.99■■□□□ 1.11
VPS28-205ENST00000526204 CDK16Q00536 496 aa21.99■■□□□ 1.11
VPS28-205ENST00000526204 NOTUMQ6P988 496 aa21.99■■□□□ 1.11
VPS28-205ENST00000526204 UNC5AQ6ZN44 842 aa21.99■■□□□ 1.11
VPS28-205ENST00000526204 CATSPER4Q7RTX7 472 aa21.99■■□□□ 1.11
VPS28-205ENST00000526204 CRYBG2Q8N1P7 616 aa21.99■■□□□ 1.11
VPS28-205ENST00000526204 C7orf31Q8N865 590 aa21.99■■□□□ 1.11
VPS28-205ENST00000526204 SH3TC2Q8TF17 1288 aa21.99■■□□□ 1.11
VPS28-205ENST00000526204 ZC3H15Q8WU90 426 aaKnown RBP21.99■■□□□ 1.11
VPS28-205ENST00000526204 ANKRD27Q96NW4 1050 aa21.99■■□□□ 1.11
VPS28-205ENST00000526204 QKIQ96PU8 341 aaKnown RBP eCLIP21.99■■□□□ 1.11
VPS28-205ENST00000526204 CXorf56Q9H5V9 222 aa21.99■■□□□ 1.11
VPS28-205ENST00000526204 RNPEPL1Q9HAU8 725 aa21.99■■□□□ 1.11
VPS28-205ENST00000526204 PRDM16Q9HAZ2 1276 aa21.99■■□□□ 1.11
VPS28-205ENST00000526204 KCNK13Q9HB14 408 aa21.99■■□□□ 1.11
VPS28-205ENST00000526204 PLAC1Q9HBJ0 212 aa21.99■■□□□ 1.11
VPS28-205ENST00000526204 E7ENQ6 273 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 MAP3K6O95382 1288 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 SERPINB9P50453 376 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms