RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 HTR3DQ70Z44 454 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 EPM2AIP1Q7L775 607 aaPredicted RBP6.94□□□□□ -1.3
CD44-221ENST00000526000 TRMT11Q7Z4G4 463 aaKnown RBP6.94□□□□□ -1.3
CD44-221ENST00000526000 ZCCHC9Q8N567 271 aaKnown RBP6.94□□□□□ -1.3
CD44-221ENST00000526000 LINC00301Q8NCQ3 95 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 PDZD8Q8NEN9 1154 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 SNX19Q92543 992 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 NDRG1Q92597 394 aaKnown RBP6.94□□□□□ -1.3
CD44-221ENST00000526000 OTUB2Q96DC9 234 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 SMARCD1Q96GM5 515 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 ZNF419Q96HQ0 510 aaPredicted RBP6.94□□□□□ -1.3
CD44-221ENST00000526000 TNIP3Q96KP6 325 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 MRGPRX1Q96LB2 322 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 CEP295NLQ96MC4 621 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 TWNKQ96RR1 684 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 C7orf25Q9BPX7 421 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 LRRC27Q9C0I9 530 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 TLR8Q9NR97 1041 aaKnown RBP6.94□□□□□ -1.3
CD44-221ENST00000526000 KBTBD4Q9NVX7 518 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 IL37Q9NZH6 218 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 WDR35Q9P2L0 1181 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 RASAL2Q9UJF2 1139 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 NAGPAQ9UK23 515 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 CLEC4EQ9ULY5 219 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 RAXQ9Y2V3 346 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 STON1Q9Y6Q2 735 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 MORC2Q9Y6X9 1032 aaPredicted RBP6.94□□□□□ -1.3
CD44-221ENST00000526000 NUP205Q92621 2012 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 ZFYVE26Q68DK2 2539 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 ATP8B3O60423 1300 aa6.94□□□□□ -1.3
CD44-221ENST00000526000 FAM208BQ5VWN6 2430 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 DENND4CQ5VZ89 1909 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 ANAPC1Q9H1A4 1944 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 CFAP47Q6ZTR5 3102 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 KNL1Q8NG31 2342 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 A0A1B0GVT2 93 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 A0A1W2PQD8 194 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 KCNJ18B7U540 433 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 EIF3DO15371 548 aaKnown RBP eCLIP6.93□□□□□ -1.3
CD44-221ENST00000526000 ZNF217O75362 1048 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 KLKB1P03952 638 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 ATXN1LP0C7T5 689 aaKnown RBP6.93□□□□□ -1.3
CD44-221ENST00000526000 ZDHHC11BP0C7U3 371 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 ZSCAN22P10073 491 aaPredicted RBP6.93□□□□□ -1.3
CD44-221ENST00000526000 NCAM1P13591 858 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 HLA-EP13747 358 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 GNSP15586 552 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 CD58P19256 250 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 CD6P30203 668 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 IL12RB1P42701 662 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 PLA2G4AP47712 749 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 CSNK1EP49674 416 aaKnown RBP6.93□□□□□ -1.3
CD44-221ENST00000526000 EFEMP1Q12805 493 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 GRIK2Q13002 908 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 ACAP1Q15027 740 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 GEN1Q17RS7 908 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 KNOP1Q1ED39 458 aaKnown RBP6.93□□□□□ -1.3
CD44-221ENST00000526000 FUT11Q495W5 492 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 PREPLQ4J6C6 727 aaPredicted RBP6.93□□□□□ -1.3
CD44-221ENST00000526000 ZNF394Q53GI3 561 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 SPDYCQ5MJ68 293 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 WDR45BQ5MNZ6 344 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 DCAF12L1Q5VU92 463 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 CEP135Q66GS9 1140 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 LAYNQ6UX15 382 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 UNC13DQ70J99 1090 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 RAB44Q7Z6P3 723 aaPredicted RBP6.93□□□□□ -1.3
CD44-221ENST00000526000 SCD5Q86SK9 330 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 PDZD3Q86UT5 571 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 TMPRSS6Q8IU80 811 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 NAXDQ8IW45 347 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 ZNF366Q8N895 744 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 IQUBQ8NA54 791 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 RHBDD1Q8TEB9 315 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 PARD3BQ8TEW8 1205 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 OVCA2Q8WZ82 227 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 CYFIP2Q96F07 1278 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 LRIG1Q96JA1 1093 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 ZNF396Q96N95 335 aaPredicted RBP6.93□□□□□ -1.3
CD44-221ENST00000526000 MKRN2Q9H000 416 aaKnown RBP6.93□□□□□ -1.3
CD44-221ENST00000526000 TNMDQ9H2S6 317 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 CCDC86Q9H6F5 360 aaKnown RBP6.93□□□□□ -1.3
CD44-221ENST00000526000 GAREM1Q9H706 876 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 CD248Q9HCU0 757 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 WSB2Q9NYS7 404 aaPredicted RBP6.93□□□□□ -1.3
CD44-221ENST00000526000 SERTAD1Q9UHV2 236 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 EIF2B4Q9UI10 523 aaKnown RBP6.93□□□□□ -1.3
CD44-221ENST00000526000 LSM7Q9UK45 103 aaKnown RBP6.93□□□□□ -1.3
CD44-221ENST00000526000 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.93□□□□□ -1.3
CD44-221ENST00000526000 STARD13Q9Y3M8 1113 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 SLCO1B1Q9Y6L6 691 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 ADAMTS9Q9P2N4 1935 aa6.93□□□□□ -1.3
CD44-221ENST00000526000 BAHCC1Q9P281 2608 aa6.92□□□□□ -1.3
CD44-221ENST00000526000 SLC12A8A0AV02 714 aa6.92□□□□□ -1.3
CD44-221ENST00000526000 UPK3BL1B0FP48 263 aa6.92□□□□□ -1.3
CD44-221ENST00000526000 HHLA1C9JL84 531 aa6.92□□□□□ -1.3
CD44-221ENST00000526000 UPK3BL2E5RIL1 263 aa6.92□□□□□ -1.3
CD44-221ENST00000526000 H0Y626 953 aa6.92□□□□□ -1.3
CD44-221ENST00000526000 CACNG3O60359 315 aa6.92□□□□□ -1.3
CD44-221ENST00000526000 SYNCRIPO60506 623 aaKnown RBP6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms