RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PBX1P40424 430 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 KRTAP10-11P60412 298 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 KCNB1Q14721 858 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 MFSD13AQ14CX5 517 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 ACOX1Q15067 660 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 ST3GAL2Q16842 350 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 AASDHQ4L235 1098 aaPredicted RBP4.76□□□□□ -1.65
CD44-217ENST00000525348 MEX3CQ5U5Q3 659 aaKnown RBP4.76□□□□□ -1.65
CD44-217ENST00000525348 RAP1GAP2Q684P5 730 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 KIAA0408Q6ZU52 694 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 GLCCI1Q86VQ1 547 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 FSTL5Q8N475 847 aaPredicted RBP4.76□□□□□ -1.65
CD44-217ENST00000525348 PJA1Q8NG27 643 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.76□□□□□ -1.65
CD44-217ENST00000525348 RPL36ALQ969Q0 106 aaKnown RBP4.76□□□□□ -1.65
CD44-217ENST00000525348 WDR24Q96S15 920 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 TMEM8AQ9HCN3 771 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 FZD4Q9ULV1 537 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 CLIC1O00299 241 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 APOL1O14791 398 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 FYB1O15117 783 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 NDST3O95803 873 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 TMEM225BP0DP42 221 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 MST1P26927 711 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 GABRB3P28472 473 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 PMS2P11Q13670 270 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 ZNF268Q14587 947 aaPredicted RBP4.75□□□□□ -1.65
CD44-217ENST00000525348 TMTC4Q5T4D3 741 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 DENND2CQ68D51 928 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 RANBP10Q6VN20 620 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.75□□□□□ -1.65
CD44-217ENST00000525348 MAP4K1Q92918 833 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 HS6ST2Q96MM7 605 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 COLEC11Q9BWP8 271 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 USP29Q9HBJ7 922 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 SEMA5BQ9P283 1151 aa4.75□□□□□ -1.65
CD44-217ENST00000525348 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.74□□□□□ -1.65
CD44-217ENST00000525348 C16orf96A6NNT2 1141 aa4.74□□□□□ -1.65
CD44-217ENST00000525348 ADAM10O14672 748 aa4.74□□□□□ -1.65
CD44-217ENST00000525348 HARSP12081 509 aaKnown RBP4.74□□□□□ -1.65
CD44-217ENST00000525348 HOXD9P28356 352 aaPredicted RBP4.74□□□□□ -1.65
CD44-217ENST00000525348 GALNSP34059 522 aa4.74□□□□□ -1.65
CD44-217ENST00000525348 RAE1P78406 368 aaKnown RBP4.74□□□□□ -1.65
CD44-217ENST00000525348 GPS1Q13098 491 aa4.74□□□□□ -1.65
CD44-217ENST00000525348 DNASE1L3Q13609 305 aa4.74□□□□□ -1.65
CD44-217ENST00000525348 HIBCHQ6NVY1 386 aaPredicted RBP4.74□□□□□ -1.65
CD44-217ENST00000525348 CCDC28AQ8IWP9 274 aa4.74□□□□□ -1.65
CD44-217ENST00000525348 OSR1Q8TAX0 266 aaPredicted RBP4.74□□□□□ -1.65
CD44-217ENST00000525348 VPS50Q96JG6 964 aa4.74□□□□□ -1.65
CD44-217ENST00000525348 ZBTB26Q9HCK0 441 aa4.74□□□□□ -1.65
CD44-217ENST00000525348 MOSPD3O75425 235 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 TMIGD3P0DMS9 266 aaPredicted RBP4.73□□□□□ -1.65
CD44-217ENST00000525348 MYL4P12829 197 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 THBS4P35443 961 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 TM4SF4P48230 202 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 YPEL5P62699 121 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 TXNL4AP83876 142 aaKnown RBP4.73□□□□□ -1.65
CD44-217ENST00000525348 SLC35G1Q2M3R5 365 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 C4orf46Q504U0 113 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 FAXCQ5TGI0 409 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 KSR2Q6VAB6 950 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 P3H2Q8IVL5 708 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 CCAR1Q8IX12 1150 aaKnown RBP4.73□□□□□ -1.65
CD44-217ENST00000525348 GLIS1Q8NBF1 620 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 DENND1AQ8TEH3 1009 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 PARD3BQ8TEW8 1205 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 ZNF48Q96MX3 618 aaPredicted RBP4.73□□□□□ -1.65
CD44-217ENST00000525348 FAM118BQ9BPY3 351 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 MAGEB5Q9BZ81 275 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 PCDHAC1Q9H158 963 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 VPS16Q9H269 839 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 MLXIPLQ9NP71 852 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 STARD7Q9NQZ5 370 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 FNIP2Q9P278 1114 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 ZMYND8Q9ULU4 1186 aaPredicted RBP4.73□□□□□ -1.65
CD44-217ENST00000525348 MAN2B2Q9Y2E5 1009 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 PCDHB2Q9Y5E7 798 aa4.73□□□□□ -1.65
CD44-217ENST00000525348 RRHO14718 337 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 DSCR3O14972 297 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 PECAM1P16284 738 aaPredicted RBP4.72□□□□□ -1.65
CD44-217ENST00000525348 TNFSF4P23510 183 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 SLC5A2P31639 672 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 CFHR1Q03591 330 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 CCDC15Q0P6D6 951 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 IFIT5Q13325 482 aaKnown RBP4.72□□□□□ -1.65
CD44-217ENST00000525348 KCNJ12Q14500 433 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 LONRF1Q17RB8 773 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 ARHGAP15Q53QZ3 475 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.72□□□□□ -1.65
CD44-217ENST00000525348 FAM209BQ5JX69 171 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 FAM90A2PQ658T7 463 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 MRNIPQ6NTE8 343 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 VSTM1Q6UX27 236 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 BEND5Q7L4P6 421 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 HIC2Q96JB3 615 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 ZCWPW1Q9H0M4 648 aa4.72□□□□□ -1.65
CD44-217ENST00000525348 ANO9A1A5B4 782 aa4.71□□□□□ -1.66
CD44-217ENST00000525348 FAM234BA2RU67 622 aa4.71□□□□□ -1.66
CD44-217ENST00000525348 OR2W5A6NFC9 320 aa4.71□□□□□ -1.66
CD44-217ENST00000525348 RASA4BC9J798 803 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms