RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SAMD3Q8N6K7 520 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 MROH8Q9H579 483 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 MCM8Q9UJA3 840 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 ADGRA2Q96PE1 1338 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 FSCN2O14926 492 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 LIASO43766 372 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 GSCP56915 257 aaPredicted RBP12.07□□□□□ -0.48
SYNPO-204ENST00000519664 ZC3H12AQ5D1E8 599 aaKnown RBP12.07□□□□□ -0.48
SYNPO-204ENST00000519664 GLB1LQ6UWU2 654 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 CYP3A43Q9HB55 503 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 PDGFCQ9NRA1 345 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 KAT6AQ92794 2004 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 FCHO1O14526 889 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 LCA5LO95447 670 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 CHRM1P11229 460 aaPredicted RBP12.07□□□□□ -0.48
SYNPO-204ENST00000519664 RALBP11234 206 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 CDC42EP1Q00587 391 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 N4BP2L1Q5TBK1 243 aaPredicted RBP12.07□□□□□ -0.48
SYNPO-204ENST00000519664 TRPM4Q8TD43 1214 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 RPRD1AQ96P16 312 aaPredicted RBP12.07□□□□□ -0.48
SYNPO-204ENST00000519664 MRPL1Q9BYD6 325 aaKnown RBP12.07□□□□□ -0.48
SYNPO-204ENST00000519664 ILKAPQ9H0C8 392 aaPredicted RBP12.07□□□□□ -0.48
SYNPO-204ENST00000519664 CDT1Q9H211 546 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 PTPRHQ9HD43 1115 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 ADARB2Q9NS39 739 aaKnown RBP12.07□□□□□ -0.48
SYNPO-204ENST00000519664 RUVBL2Q9Y230 463 aaKnown RBP12.07□□□□□ -0.48
SYNPO-204ENST00000519664 CDY2AQ9Y6F7 541 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 CDY1Q9Y6F8 540 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 CASZ1Q86V15 1759 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 IGKV6D-41A0A0C4DH26 115 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 BTNL10A8MVZ5 291 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 AKAP10O43572 662 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 HNRNPCL1O60812 293 aaKnown RBP12.07□□□□□ -0.48
SYNPO-204ENST00000519664 DRD4P21917 467 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 TNFRSF8P28908 595 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.07□□□□□ -0.48
SYNPO-204ENST00000519664 TFAP2DQ7Z6R9 452 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 TRPC7Q9HCX4 862 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 LATS2Q9NRM7 1088 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 DDX43Q9NXZ2 648 aaKnown RBP12.07□□□□□ -0.48
SYNPO-204ENST00000519664 PACSIN3Q9UKS6 424 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 NID2Q14112 1375 aa12.07□□□□□ -0.48
SYNPO-204ENST00000519664 APOC4-APOC2K7ER74 178 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 NDUFS3O75489 264 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 APOC2P02655 101 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 TFE3P19532 575 aaPredicted RBP12.06□□□□□ -0.48
SYNPO-204ENST00000519664 PTPN7P35236 360 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 LBRQ14739 615 aaKnown RBP12.06□□□□□ -0.48
SYNPO-204ENST00000519664 SGO1Q5FBB7 561 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 POLNQ7Z5Q5 900 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 HELQQ8TDG4 1101 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 ART4Q93070 314 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 LENG9Q96B70 501 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 KCNK16Q96T55 309 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 C15orf41Q9Y2V0 281 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 BCL9LQ86UU0 1499 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 MEI4A8MW99 385 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 ANGPT2O15123 496 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 RECQL4O94761 1208 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 SLC26A2P50443 739 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 PSMD7P51665 324 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 TGFB2P61812 414 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 FKBP1AP62942 108 aaKnown RBP12.06□□□□□ -0.48
SYNPO-204ENST00000519664 YWHAZP63104 245 aaKnown RBP12.06□□□□□ -0.48
SYNPO-204ENST00000519664 RBBP7Q16576 425 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 UNC45BQ8IWX7 931 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 DAW1Q8N136 415 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 SHCBP1Q8NEM2 672 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 ANKRD27Q96NW4 1050 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 B3GNT5Q9BYG0 378 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 SLC38A7Q9NVC3 462 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.06□□□□□ -0.48
SYNPO-204ENST00000519664 CPA3P15088 417 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 BEX3Q00994 111 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 BST2Q10589 180 aaKnown RBP12.06□□□□□ -0.48
SYNPO-204ENST00000519664 SZRD1Q7Z422 152 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 CKAP2Q8WWK9 683 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 SPOCK2Q92563 424 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 ZBTB18Q99592 522 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 VPS33BQ9H267 617 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 NALCNQ8IZF0 1738 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 NCF1BA6NI72 391 aaPredicted RBP12.06□□□□□ -0.48
SYNPO-204ENST00000519664 NCF1CA8MVU1 366 aaPredicted RBP12.06□□□□□ -0.48
SYNPO-204ENST00000519664 PDHXO00330 501 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 NCF1P14598 390 aaPredicted RBP12.06□□□□□ -0.48
SYNPO-204ENST00000519664 PNPLA4P41247 253 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 PLK1P53350 603 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 DRG2P55039 364 aaKnown RBP12.06□□□□□ -0.48
SYNPO-204ENST00000519664 NCKAP1LP55160 1127 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 MPP3Q13368 585 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 FASTKD3Q14CZ7 662 aaKnown RBP12.06□□□□□ -0.48
SYNPO-204ENST00000519664 ASTE1Q2TB18 679 aaPredicted RBP12.06□□□□□ -0.48
SYNPO-204ENST00000519664 GFM2Q969S9 779 aaKnown RBP12.06□□□□□ -0.48
SYNPO-204ENST00000519664 PGLYRP2Q96PD5 576 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 ZBED2Q9BTP6 218 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 FRMD8Q9BZ67 464 aaPredicted RBP12.06□□□□□ -0.48
SYNPO-204ENST00000519664 ASB7Q9H672 318 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 ZNF711Q9Y462 761 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 ORC6Q9Y5N6 252 aa12.06□□□□□ -0.48
SYNPO-204ENST00000519664 RNF103O00237 685 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms