RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 MATKP42679 507 aa21.48■■□□□ 1.03
SQSTM1-215ENST00000514093 TRPC3Q13507 836 aa21.48■■□□□ 1.03
SQSTM1-215ENST00000514093 SNRNP35Q16560 246 aaKnown RBP21.48■■□□□ 1.03
SQSTM1-215ENST00000514093 BAHD1Q8TBE0 780 aaPredicted RBP21.48■■□□□ 1.03
SQSTM1-215ENST00000514093 P2RY11Q96G91 374 aa21.48■■□□□ 1.03
SQSTM1-215ENST00000514093 MKRN2Q9H000 416 aaKnown RBP21.48■■□□□ 1.03
SQSTM1-215ENST00000514093 MARK1Q9P0L2 795 aa21.48■■□□□ 1.03
SQSTM1-215ENST00000514093 SRPRBQ9Y5M8 271 aaKnown RBP21.48■■□□□ 1.03
SQSTM1-215ENST00000514093 FAM92AA1XBS5 289 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 GFRA2O00451 464 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 BCAT2O15382 392 aaPredicted RBP21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 AP1G2O75843 785 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 BEST1O76090 585 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 CER1O95813 267 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 PRB1P04280 392 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 TXLNAP40222 546 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 CCDC65Q8IXS2 484 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 ZMIZ2Q8NF64 920 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 ADAM32Q8TC27 787 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 CGRRF1Q99675 332 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 XYLT2Q9H1B5 865 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 KIAA1586Q9HCI6 787 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 KRT82Q9NSB4 513 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 USP36Q9P275 1121 aaKnown RBP21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 EIF2B4Q9UI10 523 aaKnown RBP21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 BTBD3Q9Y2F9 522 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 ATP8B3O60423 1300 aa21.47■■□□□ 1.03
SQSTM1-215ENST00000514093 ASXL3Q9C0F0 2248 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 A0A1B0GVT2 93 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 MDM4O15151 490 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 CLIC2O15247 247 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 CLSTN1O94985 981 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 TPMTP51580 245 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 CEBPZQ03701 1054 aaKnown RBP21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 ORC1Q13415 861 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 PSMD6Q15008 389 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 CCDC157Q569K6 752 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 CCDC73Q6ZRK6 1079 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 METTL3Q86U44 580 aaKnown RBP21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 CACUL1Q86Y37 369 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 FUKQ8N0W3 1084 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 SMARCD1Q96GM5 515 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 SMOQ99835 787 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 OSER1Q9NX31 292 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 DKK4Q9UBT3 224 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 LSM7Q9UK45 103 aaKnown RBP21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 NUDT5Q9UKK9 219 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 SLCO1B1Q9Y6L6 691 aa21.46■■□□□ 1.03
SQSTM1-215ENST00000514093 METTL12A8MUP2 240 aa21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 ZNF883P0CG24 379 aa21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 CCDC130P13994 396 aa21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 IL12RB1P42701 662 aa21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 CYP2J2P51589 502 aa21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 CYP24A1Q07973 514 aa21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 STARD3Q14849 445 aa21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 RABEP1Q15276 862 aa21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 SCARA5Q6ZMJ2 495 aa21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 ACOT1Q86TX2 421 aa21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 TMPRSS6Q8IU80 811 aa21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 CADM4Q8NFZ8 388 aa21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 GZF1Q9H116 711 aaPredicted RBP21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 TLR8Q9NR97 1041 aaKnown RBP21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 COMMD8Q9NX08 183 aa21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 NFE2L3Q9Y4A8 694 aa21.45■■□□□ 1.02
SQSTM1-215ENST00000514093 TGFB1I1O43294 461 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 PHACTR2O75167 634 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 DKK1O94907 266 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 ATP5C1P36542 298 aaKnown RBP21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 CSNK1EP49674 416 aaKnown RBP21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 MAP3K7CLP57077 242 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 CAMK2BQ13554 666 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 FAM173BQ6P4H8 233 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 IL27RAQ6UWB1 636 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 DBX2Q6ZNG2 339 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 STXBP4Q6ZWJ1 553 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 FAM124AQ86V42 546 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 PDILTQ8N807 584 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 SIPA1Q96FS4 1042 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 DCBLD2Q96PD2 775 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 CDC6Q99741 560 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 SDCBP2Q9H190 292 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.44■■□□□ 1.022e-8■■■■■ 31.1
SQSTM1-215ENST00000514093 AGPAT3Q9NRZ7 376 aa21.44■■□□□ 1.02
SQSTM1-215ENST00000514093 VPS37CA5D8V6 355 aaPredicted RBP21.43■■□□□ 1.02
SQSTM1-215ENST00000514093 KCNK3O14649 394 aa21.43■■□□□ 1.02
SQSTM1-215ENST00000514093 FLRT2O43155 660 aa21.43■■□□□ 1.02
SQSTM1-215ENST00000514093 STAU1O95793 577 aaKnown RBP21.43■■□□□ 1.02
SQSTM1-215ENST00000514093 CASP4P49662 377 aa21.43■■□□□ 1.02
SQSTM1-215ENST00000514093 GOLGA8FQ08AF8 430 aa21.43■■□□□ 1.02
SQSTM1-215ENST00000514093 GOLGA8DPQ0D2H9 430 aa21.43■■□□□ 1.02
SQSTM1-215ENST00000514093 GEN1Q17RS7 908 aa21.43■■□□□ 1.02
SQSTM1-215ENST00000514093 GPRIN1Q7Z2K8 1008 aa21.43■■□□□ 1.02
SQSTM1-215ENST00000514093 SLC2A14Q8TDB8 520 aa21.43■■□□□ 1.02
SQSTM1-215ENST00000514093 SNX19Q92543 992 aa21.43■■□□□ 1.02
SQSTM1-215ENST00000514093 SYAP1Q96A49 352 aaPredicted RBP21.43■■□□□ 1.02
SQSTM1-215ENST00000514093 JAKMIP2Q96AA8 810 aa21.43■■□□□ 1.02
SQSTM1-215ENST00000514093 NMUR1Q9HB89 426 aa21.43■■□□□ 1.02
SQSTM1-215ENST00000514093 PPP4R2Q9NY27 417 aa21.43■■□□□ 1.02
SQSTM1-215ENST00000514093 FBXO10Q9UK96 956 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms