RNA–Protein interactions for RNA: ENST00000509009.5

PDPN-208, Transcript of podoplanin, humanhuman

TSL 4 BASIC

Gene PDPN, Length 571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-208ENST00000509009 STARD13Q9Y3M8 1113 aa13.16□□□□□ -0.3
PDPN-208ENST00000509009 MYO16Q9Y6X6 1858 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 MYH10P35580 1976 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 CACNG3O60359 315 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 STC2O76061 302 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 SMC2O95347 1197 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 KLKB1P03952 638 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 CISD3P0C7P0 127 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 RALAP11233 206 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 TYRP14679 529 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 P2RY2P41231 377 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 NUCB2P80303 420 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 GOLGA8FQ08AF8 430 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 GOLGA8DPQ0D2H9 430 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 CBWD6Q4V339 395 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 CBWD3Q5JTY5 395 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 CBWD5Q5RIA9 395 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 C10orf76Q5T2E6 689 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 ARHGAP17Q68EM7 881 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 IL31Q6EBC2 164 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 TCEAL6Q6IPX3 200 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 Q6ZNB5 142 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 TPGS1Q6ZTW0 290 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 MIB1Q86YT6 1006 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 FRMD1Q8N878 549 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 ZNF513Q8N8E2 541 aaPredicted RBP13.15□□□□□ -0.3
PDPN-208ENST00000509009 ANKRD52Q8NB46 1076 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 DDX1Q92499 740 aaKnown RBP13.15□□□□□ -0.3
PDPN-208ENST00000509009 TCEAL3Q969E4 200 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 TIGD1Q96MW7 591 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 XPO6Q96QU8 1125 aaKnown RBP13.15□□□□□ -0.3
PDPN-208ENST00000509009 TSG101Q99816 390 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 BBS2Q9BXC9 721 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 DNAJC17Q9NVM6 304 aaKnown RBP13.15□□□□□ -0.3
PDPN-208ENST00000509009 MARK1Q9P0L2 795 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 FBXO10Q9UK96 956 aa13.15□□□□□ -0.3
PDPN-208ENST00000509009 NEDD8-MDP1E9PL57 170 aa13.14□□□□□ -0.31
PDPN-208ENST00000509009 SLC16A3O15427 465 aaKnown RBP13.14□□□□□ -0.31
PDPN-208ENST00000509009 ADRB1P08588 477 aa13.14□□□□□ -0.31
PDPN-208ENST00000509009 WASP42768 502 aa13.14□□□□□ -0.31
PDPN-208ENST00000509009 BECN1Q14457 450 aa13.14□□□□□ -0.31
PDPN-208ENST00000509009 MAP7D1Q3KQU3 841 aa13.14□□□□□ -0.31
PDPN-208ENST00000509009 RAB41Q5JT25 222 aa13.14□□□□□ -0.31
PDPN-208ENST00000509009 TCERG1LQ5VWI1 586 aa13.14□□□□□ -0.31
PDPN-208ENST00000509009 GRAMD4Q6IC98 578 aa13.14□□□□□ -0.31
PDPN-208ENST00000509009 TADA2BQ86TJ2 420 aa13.14□□□□□ -0.31
PDPN-208ENST00000509009 PIGZQ86VD9 579 aa13.14□□□□□ -0.31
PDPN-208ENST00000509009 HMGB4Q8WW32 186 aa13.14□□□□□ -0.31
PDPN-208ENST00000509009 SMARCE1Q969G3 411 aa13.14□□□□□ -0.31
PDPN-208ENST00000509009 P2RY11Q96G91 374 aa13.14□□□□□ -0.31
PDPN-208ENST00000509009 GTPBP4Q9BZE4 634 aaKnown RBP13.14□□□□□ -0.31
PDPN-208ENST00000509009 ARMCX3Q9UH62 379 aaPredicted RBP13.14□□□□□ -0.31
PDPN-208ENST00000509009 MBD1Q9UIS9 605 aaPredicted RBP13.14□□□□□ -0.31
PDPN-208ENST00000509009 KIAA1549LQ6ZVL6 1849 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 TCRBV21S2A2A0A5A6 115 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 TRIM49BA6NDI0 452 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 PRRT4C9JH25 899 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 MAP3K13O43283 966 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 NTSR1P30989 418 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 DHPSP49366 369 aaPredicted RBP13.13□□□□□ -0.31
PDPN-208ENST00000509009 COG7P83436 770 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 LRRC63Q05C16 580 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 EFEMP1Q12805 493 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 CUL2Q13617 745 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 BYSLQ13895 437 aaKnown RBP13.13□□□□□ -0.31
PDPN-208ENST00000509009 DCAF17Q5H9S7 520 aaPredicted RBP13.13□□□□□ -0.31
PDPN-208ENST00000509009 EGFLAMQ63HQ2 1017 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 RNF43Q68DV7 783 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 PM20D1Q6GTS8 502 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 ISM2Q6H9L7 571 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 TOGARAM2Q6ZUX3 1019 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 TRMT11Q7Z4G4 463 aaKnown RBP13.13□□□□□ -0.31
PDPN-208ENST00000509009 ELOA2Q8IYF1 753 aaPredicted RBP13.13□□□□□ -0.31
PDPN-208ENST00000509009 PGBD3Q8N328 593 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 SLC35C1Q96A29 364 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 CDK5RAP1Q96SZ6 601 aaKnown RBP13.13□□□□□ -0.31
PDPN-208ENST00000509009 ACOX2Q99424 681 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 LSM14BQ9BX40 385 aaKnown RBP13.13□□□□□ -0.31
PDPN-208ENST00000509009 BCCIPQ9P287 314 aaKnown RBP eCLIP13.13□□□□□ -0.31
PDPN-208ENST00000509009 ZNF510Q9Y2H8 683 aa13.13□□□□□ -0.31
PDPN-208ENST00000509009 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.12□□□□□ -0.31
PDPN-208ENST00000509009 A0A1W2PQF6 199 aa13.12□□□□□ -0.31
PDPN-208ENST00000509009 C4orf47A7E2U8 309 aa13.12□□□□□ -0.31
PDPN-208ENST00000509009 PATE3B3GLJ2 98 aa13.12□□□□□ -0.31
PDPN-208ENST00000509009 TULP2O00295 520 aa13.12□□□□□ -0.31
PDPN-208ENST00000509009 KHNYNO15037 678 aaKnown RBP13.12□□□□□ -0.31
PDPN-208ENST00000509009 HMBSP08397 361 aa13.12□□□□□ -0.31
PDPN-208ENST00000509009 CD44P16070 742 aaKnown RBP13.12□□□□□ -0.31
PDPN-208ENST00000509009 GABRG2P18507 467 aa13.12□□□□□ -0.31
PDPN-208ENST00000509009 TKTL1P51854 596 aa13.12□□□□□ -0.31
PDPN-208ENST00000509009 YWHAGP61981 247 aaKnown RBP eCLIP13.12□□□□□ -0.31
PDPN-208ENST00000509009 IRX4P78413 519 aa13.12□□□□□ -0.31
PDPN-208ENST00000509009 PDE4CQ08493 712 aa13.12□□□□□ -0.31
PDPN-208ENST00000509009 LPCAT2Q7L5N7 544 aa13.12□□□□□ -0.31
PDPN-208ENST00000509009 CYP2U1Q7Z449 544 aa13.12□□□□□ -0.31
PDPN-208ENST00000509009 TMEFF1Q8IYR6 380 aa13.12□□□□□ -0.31
PDPN-208ENST00000509009 ARHGAP18Q8N392 663 aa13.12□□□□□ -0.31
PDPN-208ENST00000509009 UBR7Q8N806 425 aa13.12□□□□□ -0.31
PDPN-208ENST00000509009 NDRG1Q92597 394 aaKnown RBP13.12□□□□□ -0.31
PDPN-208ENST00000509009 PIGKQ92643 395 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms